Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2069 ATGCATTTCTCGATTATGCACCTTCTTCTGGTTCTTCATGCGGTCGATTTGCTTTTCTCTTGTTCAGGACAATCTTCAGCACATATATACTTATCTCCTTCCTTACAGCCAAACCTGGAAACAACAATGACAGAAATGTCGACTGAACATGCAAGGTCAGAGTCGCTGAGTTTTTCATTTGTGCCTTCAAAGTTACATGGTAACTGGATGTTTAAGTCTTCTTCGGGACCATCCCCTGCTCCTGCACCTTCTCCAGGTCCTAGGGGTGCACCCTTACCTATCCGACATCATCGACGGCGTCGTATACGACCTCATGTAGTTGCTCCTACCCCATCAAAAGATCAAGGTTGTGATCAAATATGCATGGAGCCCCTTACTGCGGCTCCCTTTGGTTCACCTTGTGGCTGTGTGTTTCCCATGAAAGTCAGACTTCTTCTGGATATAGCTCCGTATGCTGTTTTTCCTGTGATGAACGAGCTTGAAATTGAGATTGCAGAGGGGACTTACTTGGAGCAGAGCCAAGTGAAAATCATGGGTGCAAGTGCAGATAGTCAAAATCAAGGAAGAACTATGGTGGATATAAATTTAGTGCCTCTAGGTGAGAAGTTTGATAATACCACTGCAGTACTGACTTACAGAAGGTTTTGGGATAAGAAAGTGCATCTAAATATGACGCTTTTTGGTGACTATGAAGTTGTCTACATCAGCTATCCAGGGATTCCTTCTTCACCGCCATATGGAGGGTACATGGGAAGTGCTCCGAGTGGAAGTACTGGAGATCTTCCCATTACTGCAAATTTCGTTAATAAGAGCCAGAAGATGAATGTCAAAACAATTGCCATCATAGCACTTTCAGCATTTGTTGTGTTATTAGTGTTCATTGGAGCTCTTTCCATCTTTTTTAAATGGAGAAAGGTTGGCAGACCTTCTAGTGCAGTTGGTCCTGTCTTCACGTCATCAATTAATAAAAGATCTGGTCTAGGATCTGCCTTATCAAGTAGCATTGCAAGCTCCACCTCTGTTTCCCTAATTTCCACAATGCCAACAAGTATTCAATCTGTTAAAACATTTGCACTTTCAGAACTTGAGAAAGCTACAGATAAGTTTAGTTCAAAAAGGATTTTAGGTGAAGGGGGATTTGGTCGCGTTTACTGTGGTCTTTTGGAAGATGGAAATGAAGTTGCAGTTAAGTTGCTTACACGGGATAATCAGAATAGAGACCGTGAATTTATTGCAGAAGTTGAGATGTTGAGTAGACTGCACCATCGGAATCTTGTGAAACTGATTGGGATATGCATTGAAGGGCGAACTCGCTGCTTAGTTTATGAGCTTGTCCATAATGGCAGTGTTGAGTCCCACTTGCATGGCATTGACAAGAGAAAAGGACCTCTCGATTGGGATGCACGGTTAAAGATTGCTCTTGGAGCAGCAAGAGGTTTGGCATATCTTCATGAAGATTCTAATCCCCGGGTAATTCACCGTGATTTCAAGGCAAGTAATGTTCTGTTGGAAGTTGACTTCACCCCCAAGGTTTCGGATTTCGGATTGGCTAGGGAAGCAACTGAAGGAAGTGAACATATCTCAACGAGGGTCATGGGAACTTTCGGGTATGTAGCCCCTGAATATGCAATGACAGGGCACCTACTCGTCAAAAGCGATGTTTACAGCTATGGAGTCGTGCTACTTGAGCTTCTTTCAGGAAGAAAACCAGTGGACATGTCCCAACCACATGGTGAGGAGAACCTTGTGACATGGGCTCGGCCTCTTCTGACCAGTAGAGAAGGTTTGGAGCAACTAGTAGATCCTTCTCTAGCTGGCAGTTATGACTTCGATGACATGGCCAAGGTGGCTGCCATTGCTTCTATGTGCGTTCATCCGGAGGTGACCCAGAGGCCATTTATGGGGGAAGTTGTGCAGGCTCTAAAGCTGATATACAATGACACAGACGAGACATGCGCAGACTACTGCAGTCAAAAGGAGTCCTCTGCTCGGGACTCGGATTTCAAAGGCGATCTTGTGCCATCAGATAGCAGTTGGTGGAATGCCGGTGGCCTTACACCTCGACTGACATATGGTCAAGCCTCCTCCTTCATCACCATGGAATACAGCTCTGGTCCCCTTGAAGAAATGGAAAACCGACCGTTTTCAACTTCAAGTTTGATAGGGGATGAGATATCTTTGCCCATTCGGCATGGAAACAGGTCAGGTCCCTTACGAACCGCTCGAAGCAAGCCTGCCTTCTACAGATTTTCGGGAAGTAGGAGCGAGCACGGAGGACTTCTTTCAAGGCCTTCTTGGAACAGTGGGTTTTCGGTTTGA 2319 45.24 MHFSIMHLLLVLHAVDLLFSCSGQSSAHIYLSPSLQPNLETTMTEMSTEHARSESLSFSFVPSKLHGNWMFKSSSGPSPAPAPSPGPRGAPLPIRHHRRRRIRPHVVAPTPSKDQGCDQICMEPLTAAPFGSPCGCVFPMKVRLLLDIAPYAVFPVMNELEIEIAEGTYLEQSQVKIMGASADSQNQGRTMVDINLVPLGEKFDNTTAVLTYRRFWDKKVHLNMTLFGDYEVVYISYPGIPSSPPYGGYMGSAPSGSTGDLPITANFVNKSQKMNVKTIAIIALSAFVVLLVFIGALSIFFKWRKVGRPSSAVGPVFTSSINKRSGLGSALSSSIASSTSVSLISTMPTSIQSVKTFALSELEKATDKFSSKRILGEGGFGRVYCGLLEDGNEVAVKLLTRDNQNRDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGIDKRKGPLDWDARLKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEVDFTPKVSDFGLAREATEGSEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPHGEENLVTWARPLLTSREGLEQLVDPSLAGSYDFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCADYCSQKESSARDSDFKGDLVPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLIGDEISLPIRHGNRSGPLRTARSKPAFYRFSGSRSEHGGLLSRPSWNSGFSV 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42064622 42070911 - Maker00038292 Lcy12g2069 650132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2069 772 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524(InterPro)
Lcy12g2069 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g2069 772 MobiDBLite consensus disorder prediction 92 106 - -
Lcy12g2069 772 FunFam receptor-like serine/threonine-protein kinase ALE2 342 444 - -
Lcy12g2069 772 Gene3D Phosphorylase Kinase; domain 1 341 444 - -
Lcy12g2069 772 FunFam Receptor-like serine/threonine-protein kinase ALE2 445 662 - -
Lcy12g2069 772 CDD STKc_IRAK 375 644 - -
Lcy12g2069 772 Gene3D Transferase(Phosphotransferase) domain 1 445 668 - -
Lcy12g2069 772 PANTHER OS01G0750732 PROTEIN 119 666 IPR050885 -
Lcy12g2069 772 MobiDBLite consensus disorder prediction 72 113 - -
Lcy12g2069 772 Pfam Protein tyrosine and serine/threonine kinase 372 640 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g2069 772 ProSiteProfiles Protein kinase domain profile. 369 644 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g2069 772 SUPERFAMILY Protein kinase-like (PK-like) 347 644 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0363 Lcy-Chr12:4411712 Lcy12g2069 Lcy-Chr12:42064622 1.46E-121 dispersed
Lcy12g2069 Lcy-Chr12:42064622 Lcy3g1489 Lcy-Chr3:41721369 7.63E-101 dispersed
Lcy5g0575 Lcy-Chr5:6565333 Lcy12g2069 Lcy-Chr12:42064622 1.92E-77 dispersed
Lcy12g2069 Lcy-Chr12:42064622 Lcy3g2215 Lcy-Chr3:48994991 1.21E-203 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65534 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2069 - - - 0.0