Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g2069 | ATGCATTTCTCGATTATGCACCTTCTTCTGGTTCTTCATGCGGTCGATTTGCTTTTCTCTTGTTCAGGACAATCTTCAGCACATATATACTTATCTCCTTCCTTACAGCCAAACCTGGAAACAACAATGACAGAAATGTCGACTGAACATGCAAGGTCAGAGTCGCTGAGTTTTTCATTTGTGCCTTCAAAGTTACATGGTAACTGGATGTTTAAGTCTTCTTCGGGACCATCCCCTGCTCCTGCACCTTCTCCAGGTCCTAGGGGTGCACCCTTACCTATCCGACATCATCGACGGCGTCGTATACGACCTCATGTAGTTGCTCCTACCCCATCAAAAGATCAAGGTTGTGATCAAATATGCATGGAGCCCCTTACTGCGGCTCCCTTTGGTTCACCTTGTGGCTGTGTGTTTCCCATGAAAGTCAGACTTCTTCTGGATATAGCTCCGTATGCTGTTTTTCCTGTGATGAACGAGCTTGAAATTGAGATTGCAGAGGGGACTTACTTGGAGCAGAGCCAAGTGAAAATCATGGGTGCAAGTGCAGATAGTCAAAATCAAGGAAGAACTATGGTGGATATAAATTTAGTGCCTCTAGGTGAGAAGTTTGATAATACCACTGCAGTACTGACTTACAGAAGGTTTTGGGATAAGAAAGTGCATCTAAATATGACGCTTTTTGGTGACTATGAAGTTGTCTACATCAGCTATCCAGGGATTCCTTCTTCACCGCCATATGGAGGGTACATGGGAAGTGCTCCGAGTGGAAGTACTGGAGATCTTCCCATTACTGCAAATTTCGTTAATAAGAGCCAGAAGATGAATGTCAAAACAATTGCCATCATAGCACTTTCAGCATTTGTTGTGTTATTAGTGTTCATTGGAGCTCTTTCCATCTTTTTTAAATGGAGAAAGGTTGGCAGACCTTCTAGTGCAGTTGGTCCTGTCTTCACGTCATCAATTAATAAAAGATCTGGTCTAGGATCTGCCTTATCAAGTAGCATTGCAAGCTCCACCTCTGTTTCCCTAATTTCCACAATGCCAACAAGTATTCAATCTGTTAAAACATTTGCACTTTCAGAACTTGAGAAAGCTACAGATAAGTTTAGTTCAAAAAGGATTTTAGGTGAAGGGGGATTTGGTCGCGTTTACTGTGGTCTTTTGGAAGATGGAAATGAAGTTGCAGTTAAGTTGCTTACACGGGATAATCAGAATAGAGACCGTGAATTTATTGCAGAAGTTGAGATGTTGAGTAGACTGCACCATCGGAATCTTGTGAAACTGATTGGGATATGCATTGAAGGGCGAACTCGCTGCTTAGTTTATGAGCTTGTCCATAATGGCAGTGTTGAGTCCCACTTGCATGGCATTGACAAGAGAAAAGGACCTCTCGATTGGGATGCACGGTTAAAGATTGCTCTTGGAGCAGCAAGAGGTTTGGCATATCTTCATGAAGATTCTAATCCCCGGGTAATTCACCGTGATTTCAAGGCAAGTAATGTTCTGTTGGAAGTTGACTTCACCCCCAAGGTTTCGGATTTCGGATTGGCTAGGGAAGCAACTGAAGGAAGTGAACATATCTCAACGAGGGTCATGGGAACTTTCGGGTATGTAGCCCCTGAATATGCAATGACAGGGCACCTACTCGTCAAAAGCGATGTTTACAGCTATGGAGTCGTGCTACTTGAGCTTCTTTCAGGAAGAAAACCAGTGGACATGTCCCAACCACATGGTGAGGAGAACCTTGTGACATGGGCTCGGCCTCTTCTGACCAGTAGAGAAGGTTTGGAGCAACTAGTAGATCCTTCTCTAGCTGGCAGTTATGACTTCGATGACATGGCCAAGGTGGCTGCCATTGCTTCTATGTGCGTTCATCCGGAGGTGACCCAGAGGCCATTTATGGGGGAAGTTGTGCAGGCTCTAAAGCTGATATACAATGACACAGACGAGACATGCGCAGACTACTGCAGTCAAAAGGAGTCCTCTGCTCGGGACTCGGATTTCAAAGGCGATCTTGTGCCATCAGATAGCAGTTGGTGGAATGCCGGTGGCCTTACACCTCGACTGACATATGGTCAAGCCTCCTCCTTCATCACCATGGAATACAGCTCTGGTCCCCTTGAAGAAATGGAAAACCGACCGTTTTCAACTTCAAGTTTGATAGGGGATGAGATATCTTTGCCCATTCGGCATGGAAACAGGTCAGGTCCCTTACGAACCGCTCGAAGCAAGCCTGCCTTCTACAGATTTTCGGGAAGTAGGAGCGAGCACGGAGGACTTCTTTCAAGGCCTTCTTGGAACAGTGGGTTTTCGGTTTGA | 2319 | 45.24 | MHFSIMHLLLVLHAVDLLFSCSGQSSAHIYLSPSLQPNLETTMTEMSTEHARSESLSFSFVPSKLHGNWMFKSSSGPSPAPAPSPGPRGAPLPIRHHRRRRIRPHVVAPTPSKDQGCDQICMEPLTAAPFGSPCGCVFPMKVRLLLDIAPYAVFPVMNELEIEIAEGTYLEQSQVKIMGASADSQNQGRTMVDINLVPLGEKFDNTTAVLTYRRFWDKKVHLNMTLFGDYEVVYISYPGIPSSPPYGGYMGSAPSGSTGDLPITANFVNKSQKMNVKTIAIIALSAFVVLLVFIGALSIFFKWRKVGRPSSAVGPVFTSSINKRSGLGSALSSSIASSTSVSLISTMPTSIQSVKTFALSELEKATDKFSSKRILGEGGFGRVYCGLLEDGNEVAVKLLTRDNQNRDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGIDKRKGPLDWDARLKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEVDFTPKVSDFGLAREATEGSEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPHGEENLVTWARPLLTSREGLEQLVDPSLAGSYDFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCADYCSQKESSARDSDFKGDLVPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLIGDEISLPIRHGNRSGPLRTARSKPAFYRFSGSRSEHGGLLSRPSWNSGFSV | 772 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 42064622 | 42070911 | - | Maker00038292 | Lcy12g2069 | 650132 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g2069 | 772 | ProSitePatterns | Protein kinases ATP-binding region signature. | 375 | 397 | IPR017441 | GO:0005524(InterPro) | |
Lcy12g2069 | 772 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 491 | 503 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy12g2069 | 772 | MobiDBLite | consensus disorder prediction | 92 | 106 | - | - | |
Lcy12g2069 | 772 | FunFam | receptor-like serine/threonine-protein kinase ALE2 | 342 | 444 | - | - | |
Lcy12g2069 | 772 | Gene3D | Phosphorylase Kinase; domain 1 | 341 | 444 | - | - | |
Lcy12g2069 | 772 | FunFam | Receptor-like serine/threonine-protein kinase ALE2 | 445 | 662 | - | - | |
Lcy12g2069 | 772 | CDD | STKc_IRAK | 375 | 644 | - | - | |
Lcy12g2069 | 772 | Gene3D | Transferase(Phosphotransferase) domain 1 | 445 | 668 | - | - | |
Lcy12g2069 | 772 | PANTHER | OS01G0750732 PROTEIN | 119 | 666 | IPR050885 | - | |
Lcy12g2069 | 772 | MobiDBLite | consensus disorder prediction | 72 | 113 | - | - | |
Lcy12g2069 | 772 | Pfam | Protein tyrosine and serine/threonine kinase | 372 | 640 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy12g2069 | 772 | ProSiteProfiles | Protein kinase domain profile. | 369 | 644 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy12g2069 | 772 | SUPERFAMILY | Protein kinase-like (PK-like) | 347 | 644 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g0363 | Lcy-Chr12:4411712 | Lcy12g2069 | Lcy-Chr12:42064622 | 1.46E-121 | dispersed | |
Lcy12g2069 | Lcy-Chr12:42064622 | Lcy3g1489 | Lcy-Chr3:41721369 | 7.63E-101 | dispersed | |
Lcy5g0575 | Lcy-Chr5:6565333 | Lcy12g2069 | Lcy-Chr12:42064622 | 1.92E-77 | dispersed | |
Lcy12g2069 | Lcy-Chr12:42064622 | Lcy3g2215 | Lcy-Chr3:48994991 | 1.21E-203 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65534 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g2069 | - | - | - | 0.0 |