Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2072 ATGGCAGAAATGGCCTGCTCTGCCGCCGACCTCCGCCACCTCCTCGGCGACTCAGCGAACGCCACGGCCGTTGCCGAATACATTTGCGGCCGATTCGACGCCGTTTCGACGAAGTTTGTTGACACAAGTTACGCTGTTGACAACACTTACCTTCTGTTTTCAGCCTACCTTGTGTTTGCAATGCAGCTGGGATTTGCGATGCTCTGTGCTGGTTCTGTTAGAGCGAAAAACACAATGAACATTATGCTCACCAATGTTCTTGATGCTGCCACTGGTGGCATTTTTTATTATGTGTTTGGCTTTGCTTTGGCCTTTGGAACTCCTTCTAATGGCTTCATTGGCCACCATTATTTTGGCCTCTCGCAGTTTCCTTCTTCTTCGTTTGATTATGGGTTCTTTCTGTTTCAATGGGCTTTTGCCATTGCTGCTGCTGGGATTACCAGTGGATCCATTGCTGAACGGACCCAGTTCGTCGCGTATTTGATCTATTCCTCTGTCTTGACTGGTTTGGTTTATCCAATCGTCTCTCATTGGTTTTGGTCTTCCGACGGGTGGGGTAGCGCCGCTCGGTCGGAGAATCTCCTATTTGGCTCGGGAGTGATCGACTTCGCCGGCTCCGGCGTGGTCCACATGGTCGGCGGCATCGCCGGTTTATGGGGCGCCGTCATAGAAGGCCCTCGAATCGGCCGGTTCGACCACGCCGGCCGGTCCGTCGCCCTCCGTGGCCACAGCGGCACGCTAGTCGTTCTCGGCACTTTCCTCCTCTGGTTCGGCTGGTACGGCTTCAACCCCGGTTCATTCCTCAACATCCTCAAAGCCTACGGCACCACCGCCGCCGCCCCTTTTTACGGCCAATGGAGCGCCATCGGCCGCACCGCCGTCACCACCACCCTCGCCGGCTGCACGGCGGCGCTCACGACCCTCTTCGGCAAACGTCTCCTCGTCGGCCACTGGAACGTCACCGACGTCTGCAACGGCCTATTGGGCGGATTCGCCGCCATAACTTCCGGCTGCGCGGTGGTGGATCCATGGGCGGCGATCGTTTGCGGGTTTTTCGCCGCCTGGGTTTTGATCGGATTCAACAAACTGGCGCAGAAATTGAAGTACGACGATCCGTTAGAGGCGGCGCAATTGCACGGCGGCTGTGGGGCTTGGGGGATTTTGTTCACAGGCTTGTTTGCAAAACAGGCTTATGTTAACGAGATTTATCCGGGGTTGCCGGAGAGGCCGTACGGGCTGCTGATGGGCGGCGGCGGGAGGCTGCTGGCGGCTCATATGGTGCAAATTTTGTCGATCGTTGGTTGGGTTAGTGTGACAATGGGGTTGGTTTTTTGGCTGTTGCATAAGTTTCGGTTGCTGAGGATCACGGCGGAGGAGGAGATGGCCGGAATGGACTTGACGAGCCACGGTGGCTTGGCTTATGTGTATAATGACGAAGATAAGCCTGAATTTCCTTGA 1458 55.9 MAEMACSAADLRHLLGDSANATAVAEYICGRFDAVSTKFVDTSYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYVFGFALAFGTPSNGFIGHHYFGLSQFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLVYPIVSHWFWSSDGWGSAARSENLLFGSGVIDFAGSGVVHMVGGIAGLWGAVIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGTTAAAPFYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFFAAWVLIGFNKLAQKLKYDDPLEAAQLHGGCGAWGILFTGLFAKQAYVNEIYPGLPERPYGLLMGGGGRLLAAHMVQILSIVGWVSVTMGLVFWLLHKFRLLRITAEEEMAGMDLTSHGGLAYVYNDEDKPEFP 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42103574 42106303 - Maker00037841 Lcy12g2072 650135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2072 485 SUPERFAMILY Ammonium transporter 44 455 - -
Lcy12g2072 485 Gene3D Ammonium transporter AmtB like domains 28 483 IPR029020 -
Lcy12g2072 485 Pfam Ammonium Transporter Family 50 474 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy12g2072 485 PANTHER AMMONIUM TRANSPORTER 34 481 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Lcy12g2072 485 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy12g2072 485 NCBIfam ammonium transporter 47 474 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy12g2072 485 FunFam Ammonium transporter 28 484 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2072 Lcy-Chr12:42103574 Lcy13g0979 Lcy-Chr13:19348623 1.02E-66 dispersed
Lcy4g1431 Lcy-Chr4:35520064 Lcy12g2072 Lcy-Chr12:42103574 2.49E-260 transposed
Lcy11g1719 Lcy-Chr11:41051676 Lcy12g2072 Lcy-Chr12:42103574 2.56E-246 wgd
Lcy12g2072 Lcy-Chr12:42103574 Lcy13g0436 Lcy-Chr13:5033901 1.18E-251 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2072 K03320 - csv:101223077 902.123