Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2078 ATGGATTTCAACAACCAAATGGCTTTTCTTTCAACCCTTTTCCTCTGTTTTCTTTCACTTCAAGTTCAAGCAAATGCTTCCACTCTTCAAACTTACATAATTCAGCTCCACCCATTGGGATTAACCAGCTCTCTTTTTGATTCTAAGCTTCAATGGCATCTGTCTTTTCTTGAACAAACTCTGTCTGCTGAAGAAGACTCTTCTTCTCGCTTGCTTTACTCTTATTCTAACGCCATGGAAGGATTTGCAGCTCAGTTATCTGAAACTGAGCTGGAGTATTTGAAGAAGTTGCCTGATGTTGTGGCTGTAAGAGCTGATAGAAAGCATGAAATTCAGACAACTTATTCTCATAAGTTCTTGGGGCTTAGTTCAGGCACACAAGGTGTTTGGTATAAGTCCTCAATGGGCCAAGGGGCAATAGTTGGAGTTCTTGACACTGGAGTTTGGCCTGAAAGTCCAAGCTTTAGTGATTCCAAAATGCCCCCAATTCCCAAGAAATGGCGAGGGGCTTGCCAAGAAGGCCAAGATTTTAATTCCTCAATTTGTAATAGGAAACTCATTGGTGCCAAGTTCTTTATCAAAGGACATCATGTGGCTTCGTCTCCGCCGTCTGATGTTCCCCAAGAATATGTCTCCCCAAGAGACTCCCATGGCCATGGGACTCACACGTCTTCTACCGCTGCGGGAGCTGCGGTCGTAGAAGCAAGTGTGTTCGGTAATGGAGCTGGCGTAGCGCAAGGGATGGCCCCAGGAGCTCACATTGCTGTGTACAAGGTTTGCTGGTTCAGTGGCTGCTATAGTTCTGATATTGTAGCAGCTATGGATTCTGCTATAAGGGATGGTGTTGACATTCTATCTCTTTCACTTGGTGGCTTCCCGCTTCCGTTTTTCGATGACAGTATCGCCATTGGAAGTTTTCGAGCAATGCAGCATGGCATCTCCGTCGTTTGTGCAGCAGGAAACAATGGCCCAACTCAAAGCTCTGTTGCCAATGTAGCTCCTTGGATCACCACCATTGGTGCAAGCACACTCGACCGACGATTCCCAGCTATAGTTCGACTAAGCAATGGAGAAGCCATTTACGGTGAATCAATGTACCCTGGAAACAAGTTCAAGCAAGCTACCAAAGAGCTTGAGGTGGTTTATTTGACTGGAGGGCAAATGGGAGGTGAACTTTGCTTAAAAGGGTCTCTTCCACGAGAACAAGTACAAGGAAAAATGGTGCTTTGCGACCGTGGCGTCAACGGACGATCCGAAAAGGGGCAAATTGTGAAGGAATCTGGAGCAGCTGCCATGATCCTTGCAAATTCAGAGATCAACCTAGAGGAAGATTTGGTTGATGTTCATGTTTTGCCAGCCACTCTGATTGGATTTGCCGAGGCGAATCGCTTAAAAGCTTACATTAACACCACAACCAATCCAAAAGCCAGAATCCAATTTGGAGGAACTGTGATAGGAAGATCAAGAGCTCCATCTGTTGCTCAGTTTTCATCTAGAGGACCAAGCCTCTCCAATCCTTCAACTCTCAAGCCTGATGTAATTGCTCCTGGAGTCAACATTATAGCAGCTTGGCCTCAAAATCTTGGTCCAACTGGCCTTCCAGAAGATTCTAGAAGATCAAACTTCACTGTCATGTCAGGAACTTCCATGGCTTGTCCCCATGTCAGTGGAATTGCAGCTCTGATCCATTCAGCTCATCCAAAATGGACACCAGCAGCCATTAAATCAGCCATAATGACAACTGCTGATGTTACTGATCATTTTGGTAAGCCAATTCTTGATGGCAACAAACCAGCTGGCGTTTTTGCAATGGGAGCTGGACATGTAAACCCAACAAAAGCAATTGATCCTGGTTTGGTTTATGATATCAAGCCATATGAATATGTCATTCATCTTTGTGCTCTTGGATACACTCATTCAGAAATTTTCATCATCACCCACATGAATGTGAGTTGCCATAAAGTTTTGCAGATGAACAAAGGCTTCAGCCTGAACTATCCCTCCATGTCGGTCGTTTTCAAGCGCGGAACGACGAGTAAGATGGTTTCGAGACGGTTGACGAATGTAGGGAGCCCGAACGCCATCTACTCGGTGGAAGTAACGGCACCTGAAGGAGTTCGAGTTCGAGTTAAGCCTCGACGTTTGGTGTTCAAACGTGTGAACCAAAGTTTGAACTATAAGGTATGGTTTATGTCTGAGAAGGGAAGAGAAGGAAGAAAAGTGAGCTCTACAGAAGGGCATTTGACATGGGTTCATTCTGAGAATGGCAAATACAGAGTTAGAAGCCCAATTGTTGTGACTTGGAAGAACTAA 2313 45.05 MDFNNQMAFLSTLFLCFLSLQVQANASTLQTYIIQLHPLGLTSSLFDSKLQWHLSFLEQTLSAEEDSSSRLLYSYSNAMEGFAAQLSETELEYLKKLPDVVAVRADRKHEIQTTYSHKFLGLSSGTQGVWYKSSMGQGAIVGVLDTGVWPESPSFSDSKMPPIPKKWRGACQEGQDFNSSICNRKLIGAKFFIKGHHVASSPPSDVPQEYVSPRDSHGHGTHTSSTAAGAAVVEASVFGNGAGVAQGMAPGAHIAVYKVCWFSGCYSSDIVAAMDSAIRDGVDILSLSLGGFPLPFFDDSIAIGSFRAMQHGISVVCAAGNNGPTQSSVANVAPWITTIGASTLDRRFPAIVRLSNGEAIYGESMYPGNKFKQATKELEVVYLTGGQMGGELCLKGSLPREQVQGKMVLCDRGVNGRSEKGQIVKESGAAAMILANSEINLEEDLVDVHVLPATLIGFAEANRLKAYINTTTNPKARIQFGGTVIGRSRAPSVAQFSSRGPSLSNPSTLKPDVIAPGVNIIAAWPQNLGPTGLPEDSRRSNFTVMSGTSMACPHVSGIAALIHSAHPKWTPAAIKSAIMTTADVTDHFGKPILDGNKPAGVFAMGAGHVNPTKAIDPGLVYDIKPYEYVIHLCALGYTHSEIFIITHMNVSCHKVLQMNKGFSLNYPSMSVVFKRGTTSKMVSRRLTNVGSPNAIYSVEVTAPEGVRVRVKPRRLVFKRVNQSLNYKVWFMSEKGREGRKVSSTEGHLTWVHSENGKYRVRSPIVVTWKN 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42158737 42161049 + Maker00038040 Lcy12g2078 650141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2078 770 Gene3D - 632 768 - -
Lcy12g2078 770 FunFam Subtilisin-like protease SBT1.5 138 359 - -
Lcy12g2078 770 ProSitePatterns Serine proteases, subtilase family, serine active site. 547 557 IPR023828 -
Lcy12g2078 770 CDD Peptidases_S8_3 109 583 IPR034197 -
Lcy12g2078 770 Pfam Peptidase inhibitor I9 31 111 IPR010259 -
Lcy12g2078 770 Pfam Subtilase family 136 585 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy12g2078 770 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 112 IPR037045 -
Lcy12g2078 770 PRINTS Subtilisin serine protease family (S8) signature 546 562 IPR015500 -
Lcy12g2078 770 PRINTS Subtilisin serine protease family (S8) signature 215 228 IPR015500 -
Lcy12g2078 770 PRINTS Subtilisin serine protease family (S8) signature 136 155 IPR015500 -
Lcy12g2078 770 Pfam PA domain 380 464 IPR003137 -
Lcy12g2078 770 Gene3D - 345 485 - -
Lcy12g2078 770 FunFam subtilisin-like protease SBT1.5 345 485 - -
Lcy12g2078 770 MobiDBLite consensus disorder prediction 199 225 - -
Lcy12g2078 770 CDD PA_subtilisin_like 352 478 - -
Lcy12g2078 770 ProSiteProfiles Serine proteases, subtilase domain profile. 114 615 - -
Lcy12g2078 770 FunFam Subtilisin-like protease SBT1.9 20 112 - -
Lcy12g2078 770 Pfam Fibronectin type-III domain 664 766 IPR041469 -
Lcy12g2078 770 Gene3D Peptidase S8/S53 domain 139 628 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy12g2078 770 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 59 765 IPR045051 -
Lcy12g2078 770 SUPERFAMILY Subtilisin-like 112 619 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2078 Lcy-Chr12:42158737 Lcy7g1234 Lcy-Chr7:15321455 4.00E-221 dispersed
Lcy12g2078 Lcy-Chr12:42158737 Lcy7g1232 Lcy-Chr7:15267859 1.73E-222 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2078 - - - 0.0