Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g2078 | ATGGATTTCAACAACCAAATGGCTTTTCTTTCAACCCTTTTCCTCTGTTTTCTTTCACTTCAAGTTCAAGCAAATGCTTCCACTCTTCAAACTTACATAATTCAGCTCCACCCATTGGGATTAACCAGCTCTCTTTTTGATTCTAAGCTTCAATGGCATCTGTCTTTTCTTGAACAAACTCTGTCTGCTGAAGAAGACTCTTCTTCTCGCTTGCTTTACTCTTATTCTAACGCCATGGAAGGATTTGCAGCTCAGTTATCTGAAACTGAGCTGGAGTATTTGAAGAAGTTGCCTGATGTTGTGGCTGTAAGAGCTGATAGAAAGCATGAAATTCAGACAACTTATTCTCATAAGTTCTTGGGGCTTAGTTCAGGCACACAAGGTGTTTGGTATAAGTCCTCAATGGGCCAAGGGGCAATAGTTGGAGTTCTTGACACTGGAGTTTGGCCTGAAAGTCCAAGCTTTAGTGATTCCAAAATGCCCCCAATTCCCAAGAAATGGCGAGGGGCTTGCCAAGAAGGCCAAGATTTTAATTCCTCAATTTGTAATAGGAAACTCATTGGTGCCAAGTTCTTTATCAAAGGACATCATGTGGCTTCGTCTCCGCCGTCTGATGTTCCCCAAGAATATGTCTCCCCAAGAGACTCCCATGGCCATGGGACTCACACGTCTTCTACCGCTGCGGGAGCTGCGGTCGTAGAAGCAAGTGTGTTCGGTAATGGAGCTGGCGTAGCGCAAGGGATGGCCCCAGGAGCTCACATTGCTGTGTACAAGGTTTGCTGGTTCAGTGGCTGCTATAGTTCTGATATTGTAGCAGCTATGGATTCTGCTATAAGGGATGGTGTTGACATTCTATCTCTTTCACTTGGTGGCTTCCCGCTTCCGTTTTTCGATGACAGTATCGCCATTGGAAGTTTTCGAGCAATGCAGCATGGCATCTCCGTCGTTTGTGCAGCAGGAAACAATGGCCCAACTCAAAGCTCTGTTGCCAATGTAGCTCCTTGGATCACCACCATTGGTGCAAGCACACTCGACCGACGATTCCCAGCTATAGTTCGACTAAGCAATGGAGAAGCCATTTACGGTGAATCAATGTACCCTGGAAACAAGTTCAAGCAAGCTACCAAAGAGCTTGAGGTGGTTTATTTGACTGGAGGGCAAATGGGAGGTGAACTTTGCTTAAAAGGGTCTCTTCCACGAGAACAAGTACAAGGAAAAATGGTGCTTTGCGACCGTGGCGTCAACGGACGATCCGAAAAGGGGCAAATTGTGAAGGAATCTGGAGCAGCTGCCATGATCCTTGCAAATTCAGAGATCAACCTAGAGGAAGATTTGGTTGATGTTCATGTTTTGCCAGCCACTCTGATTGGATTTGCCGAGGCGAATCGCTTAAAAGCTTACATTAACACCACAACCAATCCAAAAGCCAGAATCCAATTTGGAGGAACTGTGATAGGAAGATCAAGAGCTCCATCTGTTGCTCAGTTTTCATCTAGAGGACCAAGCCTCTCCAATCCTTCAACTCTCAAGCCTGATGTAATTGCTCCTGGAGTCAACATTATAGCAGCTTGGCCTCAAAATCTTGGTCCAACTGGCCTTCCAGAAGATTCTAGAAGATCAAACTTCACTGTCATGTCAGGAACTTCCATGGCTTGTCCCCATGTCAGTGGAATTGCAGCTCTGATCCATTCAGCTCATCCAAAATGGACACCAGCAGCCATTAAATCAGCCATAATGACAACTGCTGATGTTACTGATCATTTTGGTAAGCCAATTCTTGATGGCAACAAACCAGCTGGCGTTTTTGCAATGGGAGCTGGACATGTAAACCCAACAAAAGCAATTGATCCTGGTTTGGTTTATGATATCAAGCCATATGAATATGTCATTCATCTTTGTGCTCTTGGATACACTCATTCAGAAATTTTCATCATCACCCACATGAATGTGAGTTGCCATAAAGTTTTGCAGATGAACAAAGGCTTCAGCCTGAACTATCCCTCCATGTCGGTCGTTTTCAAGCGCGGAACGACGAGTAAGATGGTTTCGAGACGGTTGACGAATGTAGGGAGCCCGAACGCCATCTACTCGGTGGAAGTAACGGCACCTGAAGGAGTTCGAGTTCGAGTTAAGCCTCGACGTTTGGTGTTCAAACGTGTGAACCAAAGTTTGAACTATAAGGTATGGTTTATGTCTGAGAAGGGAAGAGAAGGAAGAAAAGTGAGCTCTACAGAAGGGCATTTGACATGGGTTCATTCTGAGAATGGCAAATACAGAGTTAGAAGCCCAATTGTTGTGACTTGGAAGAACTAA | 2313 | 45.05 | MDFNNQMAFLSTLFLCFLSLQVQANASTLQTYIIQLHPLGLTSSLFDSKLQWHLSFLEQTLSAEEDSSSRLLYSYSNAMEGFAAQLSETELEYLKKLPDVVAVRADRKHEIQTTYSHKFLGLSSGTQGVWYKSSMGQGAIVGVLDTGVWPESPSFSDSKMPPIPKKWRGACQEGQDFNSSICNRKLIGAKFFIKGHHVASSPPSDVPQEYVSPRDSHGHGTHTSSTAAGAAVVEASVFGNGAGVAQGMAPGAHIAVYKVCWFSGCYSSDIVAAMDSAIRDGVDILSLSLGGFPLPFFDDSIAIGSFRAMQHGISVVCAAGNNGPTQSSVANVAPWITTIGASTLDRRFPAIVRLSNGEAIYGESMYPGNKFKQATKELEVVYLTGGQMGGELCLKGSLPREQVQGKMVLCDRGVNGRSEKGQIVKESGAAAMILANSEINLEEDLVDVHVLPATLIGFAEANRLKAYINTTTNPKARIQFGGTVIGRSRAPSVAQFSSRGPSLSNPSTLKPDVIAPGVNIIAAWPQNLGPTGLPEDSRRSNFTVMSGTSMACPHVSGIAALIHSAHPKWTPAAIKSAIMTTADVTDHFGKPILDGNKPAGVFAMGAGHVNPTKAIDPGLVYDIKPYEYVIHLCALGYTHSEIFIITHMNVSCHKVLQMNKGFSLNYPSMSVVFKRGTTSKMVSRRLTNVGSPNAIYSVEVTAPEGVRVRVKPRRLVFKRVNQSLNYKVWFMSEKGREGRKVSSTEGHLTWVHSENGKYRVRSPIVVTWKN | 770 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 42158737 | 42161049 | + | Maker00038040 | Lcy12g2078 | 650141 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g2078 | 770 | Gene3D | - | 632 | 768 | - | - | |
Lcy12g2078 | 770 | FunFam | Subtilisin-like protease SBT1.5 | 138 | 359 | - | - | |
Lcy12g2078 | 770 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 547 | 557 | IPR023828 | - | |
Lcy12g2078 | 770 | CDD | Peptidases_S8_3 | 109 | 583 | IPR034197 | - | |
Lcy12g2078 | 770 | Pfam | Peptidase inhibitor I9 | 31 | 111 | IPR010259 | - | |
Lcy12g2078 | 770 | Pfam | Subtilase family | 136 | 585 | IPR000209 | GO:0006508(InterPro)|GO:0008236(InterPro) | |
Lcy12g2078 | 770 | Gene3D | Peptidase S8 propeptide/proteinase inhibitor I9 | 18 | 112 | IPR037045 | - | |
Lcy12g2078 | 770 | PRINTS | Subtilisin serine protease family (S8) signature | 546 | 562 | IPR015500 | - | |
Lcy12g2078 | 770 | PRINTS | Subtilisin serine protease family (S8) signature | 215 | 228 | IPR015500 | - | |
Lcy12g2078 | 770 | PRINTS | Subtilisin serine protease family (S8) signature | 136 | 155 | IPR015500 | - | |
Lcy12g2078 | 770 | Pfam | PA domain | 380 | 464 | IPR003137 | - | |
Lcy12g2078 | 770 | Gene3D | - | 345 | 485 | - | - | |
Lcy12g2078 | 770 | FunFam | subtilisin-like protease SBT1.5 | 345 | 485 | - | - | |
Lcy12g2078 | 770 | MobiDBLite | consensus disorder prediction | 199 | 225 | - | - | |
Lcy12g2078 | 770 | CDD | PA_subtilisin_like | 352 | 478 | - | - | |
Lcy12g2078 | 770 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 114 | 615 | - | - | |
Lcy12g2078 | 770 | FunFam | Subtilisin-like protease SBT1.9 | 20 | 112 | - | - | |
Lcy12g2078 | 770 | Pfam | Fibronectin type-III domain | 664 | 766 | IPR041469 | - | |
Lcy12g2078 | 770 | Gene3D | Peptidase S8/S53 domain | 139 | 628 | IPR036852 | GO:0004252(InterPro)|GO:0006508(InterPro) | |
Lcy12g2078 | 770 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 59 | 765 | IPR045051 | - | |
Lcy12g2078 | 770 | SUPERFAMILY | Subtilisin-like | 112 | 619 | IPR036852 | GO:0004252(InterPro)|GO:0006508(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g2078 | Lcy-Chr12:42158737 | Lcy7g1234 | Lcy-Chr7:15321455 | 4.00E-221 | dispersed | |
Lcy12g2078 | Lcy-Chr12:42158737 | Lcy7g1232 | Lcy-Chr7:15267859 | 1.73E-222 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g2078 | - | - | - | 0.0 |