Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2089 ATGACGACAAAGCGGAACCATCACGGCCGTCACCTCACCGTTGCCTTCATCGGCTGTGCCGGTGACATATTTAAATCACCCGCCTGTGACCCGAGCGCTGCATCCTCCAATTTCTCAGCGCCGAATCATTTGTGCTTTGATATGATGTCAGCTGCTATAGTTTACGAGTTTGATGTCAAAATTGATATGAAATTTGTTCCTTCCTTTGATTCAAGGATGAAAGTTGAGGCGAGTCCTGCCTTATCCATTCCAAGTTCAAGTGCAAGGAAGCATAGTAGTGCAGGGGTAAATGAAGAAATATCTAAATCATTAAGAGTCCTGCTGCCAACTTGTTTAGAGGAGGTATATCCTAAGTTGCCAGATTCTCAACAGGTTTCAATGGAACGAGAGCTGGTATCAAGGCCACTTGTTCATTCTAGTCATTTACACTCTAGCAGTGGAGTGGTTGGCCATATATTTTCGTCTTCTCCGGGGTTTTCAACAGATCTCCATTACTCATCTGTTTCGTTTTACGAAAACCAATCAGATGCACCATTCATTTCCGATTCATCAGCTAATGGTGCACTGTTGCATTCTCATTCAGAACTCCTGTCATCAACAACCCATCCTACTGTTGAAAATGCGAATTCCTGGTGTTCGGTTGCACTGCCAGGTTTTCTGGAAGCTCCTGAAAATAACCCTGTTGGCAATAGTCATGTAGAAAATAATAGTTGCAGTTCTCTTATGGTATCAGATGAATTCAGTAAAGAAAATGATTGGCAGGATTGGACAGATAGACTAATAACTGATGATTCGTTGACTTCTAATTGGAGTGACCTTCTAGCGGATGCCAATGTTGCAGATTTGGAACCAAAGATGGTGCACCAAGCATCTAAACCAGCAATAAAAATGCAAGTCCAGCAGTCTCAAGTTCAAAATCAGCTTCCTTCTTCTGGGGAAATTCCTATGATTGCCACCTCAACTCCCTCTTCAAATGGAGCCCCCTCGAAGCCACGAATGCGATGGACACCAGAACTTCATGATGCTTTTGTTGAGGCTGTAAACAAGCTTGGTGGTAGTGAAAGAGCTACTCCGAAGGGTGTTCTAAAGCTTATGCAAGTGGAGGGTTTGACAATCTATCATGTGAAGAGCCACTTGCAGAAATATAGAACGGCTAGATACCATCCAGAATCATCAAAAGCAGGATCAATGGAAAAAAGCACCACCCCGCTTGAGGACATTTCATCTCTCGATCTGAAAACGAGTATTGATATCACAGAGGCTCTACGTCTGCAGATGGAAGTTCAGAAAAAGTTACATGAACAACTTGAGATCCAACGAAATTTACAGTTAAGAATAGAAGAACAAGGGAAGTACCTTCAAATGATGTTTGAAAAACAATGCAAGTCAAGCAATAACCTGACAAAGCCATCGGCATCCACTTTGGAGGATTCTCCATTTTCAGATACAGTTGATGATCTCTCTGCCAAAACAGAACTGGAAATTTCCCAGGTGGAAAATCGCACAATCCGCACCGATCCATCTGAAGCTGACACTATATCCAAAAAGGTTACTAACGACGTAGGTGGGAAGCCAGAAGCACATTCTAGGGAAGTCCTGGTGAATCTCGAGTCCGATGTTTCTGAATCTAGCTCCCAGCCATCAAAGCGCCAAAGGACAGATGAGTAG 1668 43.23 MTTKRNHHGRHLTVAFIGCAGDIFKSPACDPSAASSNFSAPNHLCFDMMSAAIVYEFDVKIDMKFVPSFDSRMKVEASPALSIPSSSARKHSSAGVNEEISKSLRVLLPTCLEEVYPKLPDSQQVSMERELVSRPLVHSSHLHSSSGVVGHIFSSSPGFSTDLHYSSVSFYENQSDAPFISDSSANGALLHSHSELLSSTTHPTVENANSWCSVALPGFLEAPENNPVGNSHVENNSCSSLMVSDEFSKENDWQDWTDRLITDDSLTSNWSDLLADANVADLEPKMVHQASKPAIKMQVQQSQVQNQLPSSGEIPMIATSTPSSNGAPSKPRMRWTPELHDAFVEAVNKLGGSERATPKGVLKLMQVEGLTIYHVKSHLQKYRTARYHPESSKAGSMEKSTTPLEDISSLDLKTSIDITEALRLQMEVQKKLHEQLEIQRNLQLRIEEQGKYLQMMFEKQCKSSNNLTKPSASTLEDSPFSDTVDDLSAKTELEISQVENRTIRTDPSEADTISKKVTNDVGGKPEAHSREVLVNLESDVSESSSQPSKRQRTDE 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42228775 42234260 + Maker00038057 Lcy12g2089 650152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2089 555 SUPERFAMILY Homeodomain-like 328 384 IPR009057 -
Lcy12g2089 555 Pfam Myb-like DNA-binding domain 332 383 IPR001005 -
Lcy12g2089 555 NCBIfam myb-like DNA-binding domain, SHAQKYF class 330 384 IPR006447 GO:0003677(InterPro)
Lcy12g2089 555 Pfam MYB-CC type transfactor, LHEQLE motif 417 462 IPR025756 -
Lcy12g2089 555 FunFam Myb family transcription factor 329 387 - -
Lcy12g2089 555 Gene3D - 329 388 - -
Lcy12g2089 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 327 387 IPR017930 -
Lcy12g2089 555 MobiDBLite consensus disorder prediction 521 535 - -
Lcy12g2089 555 MobiDBLite consensus disorder prediction 500 555 - -
Lcy12g2089 555 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 235 547 IPR046955 GO:0003700(InterPro)
Lcy12g2089 555 MobiDBLite consensus disorder prediction 464 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2089 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0853 Lcy-Chr11:25350619 Lcy12g2089 Lcy-Chr12:42228775 2.84E-23 dispersed
Lcy12g2089 Lcy-Chr12:42228775 Lcy1g2293 Lcy-Chr1:35313059 8.25E-29 dispersed
Lcy8g1563 Lcy-Chr8:42261786 Lcy12g2089 Lcy-Chr12:42228775 7.32E-06 dispersed
Lcy12g2089 Lcy-Chr12:42228775 Lcy2g1608 Lcy-Chr2:22847563 7.47E-89 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy12g0279 . 1 190 G2-like Transcription Factor Family AT5G16560 56.1 6.7e-42 169.1
Lcy12g1970 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 5.7e-41 166.0
Lcy12g1970 . 196 389 G2-like Transcription Factor Family AT4G17695 50.3 1.5e-36 151.0
Lcy13g2020 . 8 151 G2-like Transcription Factor Family AT5G42630 64.2 2.2e-42 169.9
Lcy9g2153 . 10 182 G2-like Transcription Factor Family AT5G42630 58.2 1.1e-41 167.5
Lcy10g0975 . 20 261 G2-like Transcription Factor Family AT1G25550 56.3 1.8e-54 210.3
Lcy7g0438 . 193 434 G2-like Transcription Factor Family AT1G25550 50.2 5.8e-53 205.3
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT5G05090 57.0 2.0e-74 276.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT5G05090 57.5 5.3e-72 268.5
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy8g1657 . 1 333 G2-like Transcription Factor Family AT1G79430 55.8 2.3e-78 290.0
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT3G10760 62.6 1.7e-91 333.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT3G10760 58.8 2.5e-87 319.7
Lcy1g1774 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.5e-60 230.3
Lcy12g2089 . 243 460 G2-like Transcription Factor Family AT2G20400 50.2 1.1e-44 178.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004632 1 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19313 None None None None Lcy TF