Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2089 ATGACGACAAAGCGGAACCATCACGGCCGTCACCTCACCGTTGCCTTCATCGGCTGTGCCGGTGACATATTTAAATCACCCGCCTGTGACCCGAGCGCTGCATCCTCCAATTTCTCAGCGCCGAATCATTTGTGCTTTGATATGATGTCAGCTGCTATAGTTTACGAGTTTGATGTCAAAATTGATATGAAATTTGTTCCTTCCTTTGATTCAAGGATGAAAGTTGAGGCGAGTCCTGCCTTATCCATTCCAAGTTCAAGTGCAAGGAAGCATAGTAGTGCAGGGGTAAATGAAGAAATATCTAAATCATTAAGAGTCCTGCTGCCAACTTGTTTAGAGGAGGTATATCCTAAGTTGCCAGATTCTCAACAGGTTTCAATGGAACGAGAGCTGGTATCAAGGCCACTTGTTCATTCTAGTCATTTACACTCTAGCAGTGGAGTGGTTGGCCATATATTTTCGTCTTCTCCGGGGTTTTCAACAGATCTCCATTACTCATCTGTTTCGTTTTACGAAAACCAATCAGATGCACCATTCATTTCCGATTCATCAGCTAATGGTGCACTGTTGCATTCTCATTCAGAACTCCTGTCATCAACAACCCATCCTACTGTTGAAAATGCGAATTCCTGGTGTTCGGTTGCACTGCCAGGTTTTCTGGAAGCTCCTGAAAATAACCCTGTTGGCAATAGTCATGTAGAAAATAATAGTTGCAGTTCTCTTATGGTATCAGATGAATTCAGTAAAGAAAATGATTGGCAGGATTGGACAGATAGACTAATAACTGATGATTCGTTGACTTCTAATTGGAGTGACCTTCTAGCGGATGCCAATGTTGCAGATTTGGAACCAAAGATGGTGCACCAAGCATCTAAACCAGCAATAAAAATGCAAGTCCAGCAGTCTCAAGTTCAAAATCAGCTTCCTTCTTCTGGGGAAATTCCTATGATTGCCACCTCAACTCCCTCTTCAAATGGAGCCCCCTCGAAGCCACGAATGCGATGGACACCAGAACTTCATGATGCTTTTGTTGAGGCTGTAAACAAGCTTGGTGGTAGTGAAAGAGCTACTCCGAAGGGTGTTCTAAAGCTTATGCAAGTGGAGGGTTTGACAATCTATCATGTGAAGAGCCACTTGCAGAAATATAGAACGGCTAGATACCATCCAGAATCATCAAAAGCAGGATCAATGGAAAAAAGCACCACCCCGCTTGAGGACATTTCATCTCTCGATCTGAAAACGAGTATTGATATCACAGAGGCTCTACGTCTGCAGATGGAAGTTCAGAAAAAGTTACATGAACAACTTGAGATCCAACGAAATTTACAGTTAAGAATAGAAGAACAAGGGAAGTACCTTCAAATGATGTTTGAAAAACAATGCAAGTCAAGCAATAACCTGACAAAGCCATCGGCATCCACTTTGGAGGATTCTCCATTTTCAGATACAGTTGATGATCTCTCTGCCAAAACAGAACTGGAAATTTCCCAGGTGGAAAATCGCACAATCCGCACCGATCCATCTGAAGCTGACACTATATCCAAAAAGGTTACTAACGACGTAGGTGGGAAGCCAGAAGCACATTCTAGGGAAGTCCTGGTGAATCTCGAGTCCGATGTTTCTGAATCTAGCTCCCAGCCATCAAAGCGCCAAAGGACAGATGAGTAG 1668 43.23 MTTKRNHHGRHLTVAFIGCAGDIFKSPACDPSAASSNFSAPNHLCFDMMSAAIVYEFDVKIDMKFVPSFDSRMKVEASPALSIPSSSARKHSSAGVNEEISKSLRVLLPTCLEEVYPKLPDSQQVSMERELVSRPLVHSSHLHSSSGVVGHIFSSSPGFSTDLHYSSVSFYENQSDAPFISDSSANGALLHSHSELLSSTTHPTVENANSWCSVALPGFLEAPENNPVGNSHVENNSCSSLMVSDEFSKENDWQDWTDRLITDDSLTSNWSDLLADANVADLEPKMVHQASKPAIKMQVQQSQVQNQLPSSGEIPMIATSTPSSNGAPSKPRMRWTPELHDAFVEAVNKLGGSERATPKGVLKLMQVEGLTIYHVKSHLQKYRTARYHPESSKAGSMEKSTTPLEDISSLDLKTSIDITEALRLQMEVQKKLHEQLEIQRNLQLRIEEQGKYLQMMFEKQCKSSNNLTKPSASTLEDSPFSDTVDDLSAKTELEISQVENRTIRTDPSEADTISKKVTNDVGGKPEAHSREVLVNLESDVSESSSQPSKRQRTDE 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42228775 42234260 + Maker00038057 Lcy12g2089 650152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2089 555 SUPERFAMILY Homeodomain-like 328 384 IPR009057 -
Lcy12g2089 555 Pfam Myb-like DNA-binding domain 332 383 IPR001005 -
Lcy12g2089 555 NCBIfam myb-like DNA-binding domain, SHAQKYF class 330 384 IPR006447 GO:0003677(InterPro)
Lcy12g2089 555 Pfam MYB-CC type transfactor, LHEQLE motif 417 462 IPR025756 -
Lcy12g2089 555 FunFam Myb family transcription factor 329 387 - -
Lcy12g2089 555 Gene3D - 329 388 - -
Lcy12g2089 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 327 387 IPR017930 -
Lcy12g2089 555 MobiDBLite consensus disorder prediction 521 535 - -
Lcy12g2089 555 MobiDBLite consensus disorder prediction 500 555 - -
Lcy12g2089 555 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 235 547 IPR046955 GO:0003700(InterPro)
Lcy12g2089 555 MobiDBLite consensus disorder prediction 464 483 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0853 Lcy-Chr11:25350619 Lcy12g2089 Lcy-Chr12:42228775 2.84E-23 dispersed
Lcy12g2089 Lcy-Chr12:42228775 Lcy1g2293 Lcy-Chr1:35313059 8.25E-29 dispersed
Lcy8g1563 Lcy-Chr8:42261786 Lcy12g2089 Lcy-Chr12:42228775 7.32E-06 dispersed
Lcy12g2089 Lcy-Chr12:42228775 Lcy2g1608 Lcy-Chr2:22847563 7.47E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19313 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2089 - - - 0.0