Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2097 ATGAAGAGCGATGTTAAGGTAAAAAGGGGGAGGAGAGCTGGAAAAGGGGAGAATTTTAGGAAGATAATGAATTGTTTATGTTCTGGAGAGAAAAGAGCTGGTGATGATATGATTCCTGCATCAGAATCCGCTTCGGCTTTGGAGAATTCGGCAAGCGAACACTCGTCACGGATTGGCGAGATCGTCAAGAAGCCAGAATTCGGCAATATAGAAGAAGCCGAGTCTTCGCTTCGTGAGAGTGGTTCTTTGAATTATGAGGTTAGAGTCCTTAAGCTTTCTAGTTGCAAGTTATCTTTCTTAGCTTATTGTTTCATTTACAAACTTATTGCCATGGAGCAAAGAAGGAACAAGTTCTTTCTTTTCCTCTCATGTTTTTCTGCAGAGGAAGCAAGAGCATTGCTGGGAAGATATGAATATCAGAAAGGAAATATTGAAGCTGCACTTCATGTATTTGAAGGAATAGATATCACTGCAGTAACTAATAAGATAATGGCCTCCATTGCTAGAAAAGGAGACCGTCCAAGGAGACGATCGCAAAATTTTACTACCCCGCCGATGTCTATGCATGCTGTTGGTTTACTCTTTGAAGCCATCTTTCTTAAAGCAAAATCATTGCAAGGTCTTGTGAGGTTTGGAGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGCTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCAGGAGACAGTTACAAAGGCCGTCGAGCTGCTACCAGAACTATGGAAACTAGGTGATTCTTCTCAAGATGCAATCCTTTCGTATCGGCGGGCACTCCTTCATCAGTGGAACCTTGATGCGGGAACCACCGCTCGAATTCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGAAGTGAAGCATGCCCTCCGAATCTCCGGTGCCAAATGGACGGCTCATTTGCACCAAAAAACAATATTGAAGAAGCTATACTCTTATTTATGATACTACTTAGAAAAGTTGTTCTTAAAAGGATTGATTGGGATCCATCAATCTTGGATCACCTCTCCTTTGCTCTAGCAATATCTGGGGATACAAGGGCTTTAGCTGGACAAATAGAGGAATTGCCTCCTGGGATTCTACATCGAAAGGATAGGTACCATGCTCTAGCTCTATGTTATTATGGAGCGGGCGAAGACTTGACTGCTTTGAATTTGTTGAGGAAATTGTTGGCCAGTCATGAGGATCCGAAATCTGTTCCTGCTTTATTAATGGCATCAAAGATTTGTGGAGAGAACCCCAACCTTGCTGAGGAAGGAGCGAGTTTTGCTCGTAGAGCTCTTCAAAACTTGGATGCTGGATGTGATCAGTTGGAAGGTGTTGCCAACTGTTTGTTGGGTGTCTCACTGTCTGTACATTCTAAATCAGCCATTGCAGATTCCGAGCGGTCCACCAGACAATCTGAGGCGATAGAGGCCCTGGAAGCTGCGCGGAAGAAGACTAGAATGACCGACCCGAATGTTCTCTATCATTTGAGTCTTGAATATGCCGACGAGAGGAAGTTAGATTCAGCACTTCATTATGCGAAGAAGTGTCTCAAACTGGAAGGTGGATCCGATGTTAAAACTTGGTTACTACTGGCTAGGATTCTCTCTGCCCAAAAACGATTTACGGACGGCGAAAGCATTATAAATGCAGCCCTGGAGCAGACAGTGAAATGGGATCAAGACGAGTTGCTTCGAACGAAAGCAAAGCTTCTGATAGCACAGGATGAGTTGAAAGGTGCTATTGACACATATACTCAATTACTCGCTGTTTTTCAAGTTCAGAGTAAAAGTTTTGGCTTAGGAGATAAGGAGCTACATAAGAGCAGCAGACATTATGTTAGAAGTTTGCAAATGGAAGTGTGGCATGATCTAGCTCTAGTCTACATAAGGCTCTCACTATGGCACGACGCCGAGGCCTGCCTTTCAAAGTCGAAGGCCATTCGTTCTCATTCGGCTACTAGATGTCATATCACAGGTATGCTTTATGAAGCAAAAGGCTTGTATAAAGAAGCTCTGAAAGCCTTTATGGCTGCTCTGGACATTGATCCAGCTCATGTTCCGAGCTTGGTTTCGTCTGCGGTGGTTATCAGACATCTTGGCCACCGATCGCACCCCGTTATTCACAGCTTTTTGATGGATGCTCTACGGCTTGACCAGACGAACCACGCTGCGTGGTACAATCTCGGGCTGTTCTACAAATCTGAAGGAACCAAGTCTTCATTGGCAGAAGCTGTTGAATGTTTTGAGGCTGCAACTTTCCTTGAAGAGTCTGCTCCTGTTGAGCCCTTTAGATAA 2331 43.89 MKSDVKVKRGRRAGKGENFRKIMNCLCSGEKRAGDDMIPASESASALENSASEHSSRIGEIVKKPEFGNIEEAESSLRESGSLNYEVRVLKLSSCKLSFLAYCFIYKLIAMEQRRNKFFLFLSCFSAEEARALLGRYEYQKGNIEAALHVFEGIDITAVTNKIMASIARKGDRPRRRSQNFTTPPMSMHAVGLLFEAIFLKAKSLQGLVRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQETVTKAVELLPELWKLGDSSQDAILSYRRALLHQWNLDAGTTARIQKEFAIFLLYSGSEACPPNLRCQMDGSFAPKNNIEEAILLFMILLRKVVLKRIDWDPSILDHLSFALAISGDTRALAGQIEELPPGILHRKDRYHALALCYYGAGEDLTALNLLRKLLASHEDPKSVPALLMASKICGENPNLAEEGASFARRALQNLDAGCDQLEGVANCLLGVSLSVHSKSAIADSERSTRQSEAIEALEAARKKTRMTDPNVLYHLSLEYADERKLDSALHYAKKCLKLEGGSDVKTWLLLARILSAQKRFTDGESIINAALEQTVKWDQDELLRTKAKLLIAQDELKGAIDTYTQLLAVFQVQSKSFGLGDKELHKSSRHYVRSLQMEVWHDLALVYIRLSLWHDAEACLSKSKAIRSHSATRCHITGMLYEAKGLYKEALKAFMAALDIDPAHVPSLVSSAVVIRHLGHRSHPVIHSFLMDALRLDQTNHAAWYNLGLFYKSEGTKSSLAEAVECFEAATFLEESAPVEPFR 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42276303 42279997 - Maker00037982 Lcy12g2097 650160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2097 776 PANTHER PROTEIN NPG1 13 86 IPR043376 -
Lcy12g2097 776 SUPERFAMILY TPR-like 483 602 IPR011990 GO:0005515(InterPro)
Lcy12g2097 776 ProSiteProfiles TPR repeat profile. 664 697 IPR019734 GO:0005515(InterPro)
Lcy12g2097 776 Gene3D Tetratricopeptide repeat domain 41 627 IPR011990 GO:0005515(InterPro)
Lcy12g2097 776 Pfam Tetratricopeptide repeat 671 697 IPR019734 GO:0005515(InterPro)
Lcy12g2097 776 SMART tpr_5 630 663 IPR019734 GO:0005515(InterPro)
Lcy12g2097 776 SMART tpr_5 734 770 IPR019734 GO:0005515(InterPro)
Lcy12g2097 776 SMART tpr_5 664 697 IPR019734 GO:0005515(InterPro)
Lcy12g2097 776 SMART tpr_5 502 535 IPR019734 GO:0005515(InterPro)
Lcy12g2097 776 SMART tpr_5 537 570 IPR019734 GO:0005515(InterPro)
Lcy12g2097 776 SMART tpr_5 573 606 IPR019734 GO:0005515(InterPro)
Lcy12g2097 776 SUPERFAMILY TPR-like 572 748 IPR011990 GO:0005515(InterPro)
Lcy12g2097 776 Gene3D Tetratricopeptide repeat domain 628 772 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2097 Lcy-Chr12:42276303 Lcy13g2134 Lcy-Chr13:40265217 2.53E-169 dispersed
Lcy11g1685 Lcy-Chr11:40706887 Lcy12g2097 Lcy-Chr12:42276303 7.74E-284 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2097 K21843 - csv:101223229 1231.85