Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2119 ATGGGAAAGGATCAATTACAAGTACTAAATGCACTTGATGTAGCCAAAACTCAATGGTACCATTTCACAGCAATCATCATTGCTGGAATGGGATTTTTCACTGATGCATATGATCTGTTCTGCATATCTCTTGTCACCAAATTACTTGGAAGAATATACTATCATGTTGATGGCTCACCAAAGCCAGGGACATTGCCTCCAAATGTTGCTGCTGCTGTGAATGGTGTGGCTTTCTGTGGGACGCTAGCAGGGCAGCTCTTCTTTGGCTGGTTGGGCGACAAAATGGGGCGAAAGCGAGTTTACGGCATGACTCTAATGCTCATGGTCATATGCTCTATAGGCTCAGGCCTGTCCTTTGGCCACAATTCACAATCTGTTATGACTACTCTCTGCTTCTTTCGGTTCTGGCTCGGCTTCGGCATCGGTGGCGATTACCCTCTTTCGGCAACCATCATGTCGGAGTACTCGAATAAGAAGACTCGTGGTGCATTCATTGCTGCAGTGTTTGCTATGCAGGGGTTTGGAATTTTGGGTGGAGGCATATTTGCCATTATAGTCTCTGTGGCCTTTGAGGCCAAGTATCATGCTCCACCTTATGAAGTTGATCCAGTTGCATCCACTGTGCCACAAGCAGATTACATTTGGAGGATCATTCTAATGGTTGGAGCTCTTCCAGCTGCTCTTACTTACTATTGGAGGATGAAGATGCCCGAAACCGCACGGTACACTGCTCTTGTAGCGAAAGATACGACTCAAGCTGCATCAGATATGTCAAAAGTTTTGCAGATGGATATTGAGGCAGAACCACAAAAGCCTGCTCAGCAGATGCCAGATGCAACTGCAAGTGCAAGTGCAAGTGCATATGGTCTATTCTCTAGAGAGTTTTTTCGTCGCCATGGAACTCACTTACTTGGAACTACAAGTACTTGGTTTTTACTTGACATTGCATTCTACAGTCAGAATTTGTTCCAAAAAGATATCTTCAGTGCTATTGGATGGATTCCTCCAGCAGCTACCATGAATGCAATTCAAGAAGTTTTCAGAATAGCAAGGGCTCAAACACTCATTGCCCTTTGCAGTACTGTCCCTGGCTACTGGTTCACCGTGGCTTTCATTGACAAGATAGGAAGATTTGCCATTCAACTCATGGGATTCTTCTTCATGACAGTCTTCATGTTTGCTCTTGCCATTCCATACCATCACTGGACTCTAAAGGACAACCGTATTGGCTTCGTTGTCCTCTACTCGTTAACGTTCTTCTTTGCGAATTTCGGACCGAATGCAACCACTTTCGTTGTCCCAGCTGAAATCTTTCCAGCACGATTCCGTTCTACTTGCCACGGTATATCATCAGCATCTGGCAAGCTTGGAGCTATGGTGGGTGCATTCGGTTTTCTATATTTGGCTCAGAACCAGGACAAGAACAAAACTGATGCAGGATATCCTCCTGGCATTGGAGTCAAGAACTCACTTCTATTGTTGGGTGGACTCAACTTCTTGGGAATTCTGTTTACTTTTCTCGTGCCTGAAGCGAAGGGAAAATCGTTGGAAGAGATGTCGGGCGAGAACGAAGATGGAACTATTAGAGAGTTGGGAGACCAGACCCCTACTGGTAGTAGAACAGCCTCACATGTTTGA 1638 45.3 MGKDQLQVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGSPKPGTLPPNVAAAVNGVAFCGTLAGQLFFGWLGDKMGRKRVYGMTLMLMVICSIGSGLSFGHNSQSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILGGGIFAIIVSVAFEAKYHAPPYEVDPVASTVPQADYIWRIILMVGALPAALTYYWRMKMPETARYTALVAKDTTQAASDMSKVLQMDIEAEPQKPAQQMPDATASASASAYGLFSREFFRRHGTHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAATMNAIQEVFRIARAQTLIALCSTVPGYWFTVAFIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLKDNRIGFVVLYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISSASGKLGAMVGAFGFLYLAQNQDKNKTDAGYPPGIGVKNSLLLLGGLNFLGILFTFLVPEAKGKSLEEMSGENEDGTIRELGDQTPTGSRTASHV 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42485577 42487214 - Maker00038290 Lcy12g2119 650182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2119 545 NCBIfam phosphate:H+ symporter 11 522 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Lcy12g2119 545 MobiDBLite consensus disorder prediction 517 545 - -
Lcy12g2119 545 Pfam Sugar (and other) transporter 26 520 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy12g2119 545 SUPERFAMILY MFS general substrate transporter 11 520 IPR036259 -
Lcy12g2119 545 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 9 518 - -
Lcy12g2119 545 Gene3D MFS general substrate transporter like domains 20 269 IPR036259 -
Lcy12g2119 545 Gene3D MFS general substrate transporter like domains 276 536 IPR036259 -
Lcy12g2119 545 MobiDBLite consensus disorder prediction 530 545 - -
Lcy12g2119 545 CDD MFS_PhT 25 512 - -
Lcy12g2119 545 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 513 IPR020846 GO:0022857(InterPro)
Lcy12g2119 545 FunFam Inorganic phosphate transporter 1-6 20 532 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1663 Lcy-Chr11:40497617 Lcy12g2119 Lcy-Chr12:42485577 3.04E-294 dispersed
Lcy12g2119 Lcy-Chr12:42485577 Lcy6g0102 Lcy-Chr6:948176 2.01E-222 dispersed
Lcy12g2119 Lcy-Chr12:42485577 Lcy12g2120 Lcy-Chr12:42491286 0 tandem
Lcy10g1207 Lcy-Chr10:34700752 Lcy12g2119 Lcy-Chr12:42485577 5.22E-293 transposed
Lcy1g2121 Lcy-Chr1:29027742 Lcy12g2119 Lcy-Chr12:42485577 3.91E-28 transposed
Lcy9g2351 Lcy-Chr9:47815231 Lcy12g2119 Lcy-Chr12:42485577 5.65E-186 transposed
Lcy11g1662 Lcy-Chr11:40474248 Lcy12g2119 Lcy-Chr12:42485577 2.64E-290 wgd
Lcy12g2119 Lcy-Chr12:42485577 Lcy13g0374 Lcy-Chr13:4260426 2.37E-300 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2119 K08176 - mtr:25499257 911.753