Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2120 ATGGGAAAGGAGCAATTTCAAGTATTGAATGCACTTGATGTAGCCAAAACACAATGGTACCATTTCACAGCAATCATCATTGCTGGAATGGGATTCTTTACTGATGCATATGATTTGTTCTGCATATCTCTTGTCACCAAATTACTTGGAAGAATATACTATCATGTTGATGGCTCACCAAAGCCTGGGACATTGCCTCCAAATGTTGCTGCTGCTGTGAATGGTGTGGCGTTCTGTGGAACGCTAGCAGGGCAACTCTTCTTTGGCTGGTTGGGCGACAAAATGGGGCGAAAGCGAGTTTATGGCATGACTCTAATGCTCATGGTTATATGCTCGATAGGCTCAGGCCTGTCCTTTGGCCACAATTCACAATCTGTTATGACTACTCTCTGCTTCTTTCGGTTCTGGCTCGGCTTTGGCATTGGTGGCGATTACCCTCTTTCGGCAACCATCATGTCGGAGTACTCGAATAAGAAGACTCGTGGTGCATTCATTGCTGCTGTGTTCGCTATGCAGGGGTTTGGAATTTTGGGTGGAGGCATGTTTGCCATTTTCATCTCTCTTGCATTTAAGGCCAAGTTTGATGCTCCACCTTATGCAGTTGATCCAATTGCCTCCACTGTGCCCCAAGCAGATTACATTTGGAGGATCATTCTAATGGTTGGAGCTCTTCCAGCTGCTCTTACTTACTACTGGAGGATGAAAATGCCTGAAACCGTACGGTATACGGCTCTCGTAGCCAAAAATACAACTCAAGCTGCATCAGACATGTCAAAAGTTCTGCACATGGATATTGAGGTAGAAACACAAAAACCTACTCAGCAGATACCAAAAGCAAATGCAAATGCATATGGCCTGTTCTCGAAAGAGTTTCTTCGTCGCCATGGAACCCACTTGCTTGGAACTACAAGTACTTGGTTTTTACTTGACATTGCATTCTATAGCCAGAACTTGTTTCAGAAAGATATCTTCAGCGCAATTGGATGGATTCCTCCAGCAGCCACCATGAATGCAATTGAAGAAGTTTTCAGAATAGCAAGGGCTCAAACACTCATTGCCCTCTGCAGTACTGTCCCTGGCTACTGGTTCACCGTGGCTTTCATTGACAAGATGGGAAGATTTGCCATTCAACTCATGGGATTCTTCTTCATGACAGTCTTCATGTTTGCTCTTGCCATTCCATACCATCACTGGACTCTAAAGGACAACCGTATTGGCTTCGTTGTCCTCTACTCGTTAACGTTCTTCTTTGCGAATTTCGGACCGAATGCAACCACTTTCGTTGTCCCAGCTGAAATCTTTCCAGCAAGATTCCGTGCTACTTGCCACGGTATATCATCAGCATCTGGCAAGCTTGGAGCTATGGTGGGTGCATTTGGTTTTCTATATTTGGCTCAAAACCAGGACAAGAACAAAACTGATGCAGGATATCCTCCTGGCATTGGAGTCAAGAACTCACTTCTGTTGTTGGGTGGACTCAACTTCTTGGGGATTCTGTTTACTTTTCTCGTGCCTGAAGCGAAGGGGAAATCGTTGGAAGAGATGTCGGGCGAGAACGAAGACGGAACCATGGGAGAAAAGGGGAGGCAAACATCTAGCCATAGAACAGTTTCAGATGTTTAA 1623 45.1 MGKEQFQVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGSPKPGTLPPNVAAAVNGVAFCGTLAGQLFFGWLGDKMGRKRVYGMTLMLMVICSIGSGLSFGHNSQSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILGGGMFAIFISLAFKAKFDAPPYAVDPIASTVPQADYIWRIILMVGALPAALTYYWRMKMPETVRYTALVAKNTTQAASDMSKVLHMDIEVETQKPTQQIPKANANAYGLFSKEFLRRHGTHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAATMNAIEEVFRIARAQTLIALCSTVPGYWFTVAFIDKMGRFAIQLMGFFFMTVFMFALAIPYHHWTLKDNRIGFVVLYSLTFFFANFGPNATTFVVPAEIFPARFRATCHGISSASGKLGAMVGAFGFLYLAQNQDKNKTDAGYPPGIGVKNSLLLLGGLNFLGILFTFLVPEAKGKSLEEMSGENEDGTMGEKGRQTSSHRTVSDV 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42491286 42492908 - Maker00038159 Lcy12g2120 650183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2120 540 MobiDBLite consensus disorder prediction 513 540 - -
Lcy12g2120 540 Gene3D MFS general substrate transporter like domains 20 533 IPR036259 -
Lcy12g2120 540 CDD MFS_PhT 25 508 - -
Lcy12g2120 540 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 509 IPR020846 GO:0022857(InterPro)
Lcy12g2120 540 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 9 514 - -
Lcy12g2120 540 Pfam Sugar (and other) transporter 26 516 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy12g2120 540 FunFam Inorganic phosphate transporter 1-6 20 530 - -
Lcy12g2120 540 NCBIfam phosphate:H+ symporter 11 518 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Lcy12g2120 540 SUPERFAMILY MFS general substrate transporter 12 516 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1207 Lcy-Chr10:34700752 Lcy12g2120 Lcy-Chr12:42491286 1.44E-291 dispersed
Lcy11g1662 Lcy-Chr11:40474248 Lcy12g2120 Lcy-Chr12:42491286 2.31E-292 dispersed
Lcy12g2120 Lcy-Chr12:42491286 Lcy13g0374 Lcy-Chr13:4260426 6.48E-299 dispersed
Lcy12g2119 Lcy-Chr12:42485577 Lcy12g2120 Lcy-Chr12:42491286 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2120 K08176 - gmx:100819445 916.761