Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2121 ATGTCGGAATCGGAGTCGAAGATCGTAGTGAAGGAAGAGATCGAAGTGAGTTCGATCGATTTCGAGGAGGAGAAAGAGAGGAAGACGACGGAGAAGAGTTACAGAGGAGTGAGGCGGCGGCCTTGGGGGAAATACGCGGCGGAGATCAGGGATTCGACGAGGCATGGAGTTAGGGTTTGGCTCGGGACTTTCGACAGCGCTGAGGCCGCCGCTTTAGCTTACGATCAAGCGGCATTCTCAATGAGAGGAGAAATGGCGGTGTTGAATTTTCCGGTGGAAATGGTGAGAGAATCGCTTCAGGACGTCGAGTATCGACTGGAAGAAGGATGCTCGCCGGTGGTGGCGTTGAAGAGAAAACACTCACTGAGAAGGAAGTCGGCGGCGGCGGCGGCGAAAAGCCAAGGGGTGGCGGAGAAGAAGAAGATGAAGAAGAAGAACAATGTGGTGATTTTGGAAGATTTGGGAACAGAGTATTTGGAGGAACTTTTGATGCTAAGTTCATGTGAGAGTAGTAGTAGTATCAGTCCTTTCTGA 534 51.31 MSESESKIVVKEEIEVSSIDFEEEKERKTTEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGEMAVLNFPVEMVRESLQDVEYRLEEGCSPVVALKRKHSLRRKSAAAAAKSQGVAEKKKMKKKNNVVILEDLGTEYLEELLMLSSCESSSSISPF 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42513018 42513551 - Maker00038184 Lcy12g2121 650184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2121 177 ProSiteProfiles AP2/ERF domain profile. 33 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g2121 177 Gene3D AP2/ERF domain 32 93 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g2121 177 Pfam AP2 domain 33 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g2121 177 CDD AP2 34 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g2121 177 SMART rav1_2 33 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g2121 177 PANTHER DNA-BINDING DOMAIN 24 140 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Lcy12g2121 177 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g2121 177 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g2121 177 FunFam Ethylene-responsive transcription factor 2 32 93 - -
Lcy12g2121 177 SUPERFAMILY DNA-binding domain 33 93 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2121 Lcy-Chr12:42513018 Lcy3g1529 Lcy-Chr3:42230866 5.95E-55 dispersed
Lcy11g1658 Lcy-Chr11:40427688 Lcy12g2121 Lcy-Chr12:42513018 5.95E-27 wgd
Lcy12g2121 Lcy-Chr12:42513018 Lcy13g0366 Lcy-Chr13:4075482 1.62E-29 wgd
Lcy12g2121 Lcy-Chr12:42513018 Lcy3g1470 Lcy-Chr3:41474652 1.70E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19316 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2121 K14516 - csv:101220325 224.172