Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2127 ATGACAGGCTCTGGTTCTCCATGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTGTCAGAGGCTGTGTTTTTGCTCCTTATTTCTGCCATGAACAAGGAGCCACTCATTTTGCTGCCATTCACAAGGTCTTTGGAGCTAGCAATGTCTCTAAGCTTCTCGCTCGTCTCCCTGTTAGTGAGCGCTGTGAGGCTGCTGTCACCATTTCTTATGAAGCTCAAGCTCGCCTTCAAGATCCTATCTATGGCTGTGTCTCCCATATCTTTGCCCTTCAGCAACAGGTTGTGAACCTTCAGGCACAACTTGCTTCTCTGAAGGAACAAGCGGCGGAGAGCATTATGAACAGCGGCTCCGGTAACGGGGGCGGGGTCGTGAATGAGAAGAATTGCAGAAAGGTGGTTCCTTCTCATCCCCAAGATCTCCATAGCTGGTTTCACTCGGAGCATCCGAACGTGACGCCCGAGTTCAATCCGAACCCGAGTCACAATTCGGCATCGAACCCTTATTATGATGAGAATTATCGCATTATGGTTAATTCTCAGTCGAATGGGAACTACGAACATCACATGGCTAAAATGGAGGAGAGTGGATCATATGGAAGCTTTGAAGAAAGCTCAGGCTATTCCATGTACACTCTTGATCAACTGCATTCAAATGTTCAACAATGGAGCTTCAATGACTCTGCTGATGATTTACAATCAGTTGCTTTTGGAAATGCTCGACATTGGTGA 729 46.78 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPVSERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQAAESIMNSGSGNGGGVVNEKNCRKVVPSHPQDLHSWFHSEHPNVTPEFNPNPSHNSASNPYYDENYRIMVNSQSNGNYEHHMAKMEESGSYGSFEESSGYSMYTLDQLHSNVQQWSFNDSADDLQSVAFGNARHW 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42574696 42575776 + Maker00038153 Lcy12g2127 650190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2127 242 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Lcy12g2127 242 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Lcy12g2127 242 Coils Coil 87 114 - -
Lcy12g2127 242 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 235 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2127 Lcy-Chr12:42574696 Lcy3g1283 Lcy-Chr3:38744123 9.98E-62 dispersed
Lcy12g2127 Lcy-Chr12:42574696 Lcy12g2128 Lcy-Chr12:42582856 2.05E-54 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19317 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2127 K13945 - csv:101214764 392.504