Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g2127 | ATGACAGGCTCTGGTTCTCCATGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTGTCAGAGGCTGTGTTTTTGCTCCTTATTTCTGCCATGAACAAGGAGCCACTCATTTTGCTGCCATTCACAAGGTCTTTGGAGCTAGCAATGTCTCTAAGCTTCTCGCTCGTCTCCCTGTTAGTGAGCGCTGTGAGGCTGCTGTCACCATTTCTTATGAAGCTCAAGCTCGCCTTCAAGATCCTATCTATGGCTGTGTCTCCCATATCTTTGCCCTTCAGCAACAGGTTGTGAACCTTCAGGCACAACTTGCTTCTCTGAAGGAACAAGCGGCGGAGAGCATTATGAACAGCGGCTCCGGTAACGGGGGCGGGGTCGTGAATGAGAAGAATTGCAGAAAGGTGGTTCCTTCTCATCCCCAAGATCTCCATAGCTGGTTTCACTCGGAGCATCCGAACGTGACGCCCGAGTTCAATCCGAACCCGAGTCACAATTCGGCATCGAACCCTTATTATGATGAGAATTATCGCATTATGGTTAATTCTCAGTCGAATGGGAACTACGAACATCACATGGCTAAAATGGAGGAGAGTGGATCATATGGAAGCTTTGAAGAAAGCTCAGGCTATTCCATGTACACTCTTGATCAACTGCATTCAAATGTTCAACAATGGAGCTTCAATGACTCTGCTGATGATTTACAATCAGTTGCTTTTGGAAATGCTCGACATTGGTGA | 729 | 46.78 | MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPVSERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQAAESIMNSGSGNGGGVVNEKNCRKVVPSHPQDLHSWFHSEHPNVTPEFNPNPSHNSASNPYYDENYRIMVNSQSNGNYEHHMAKMEESGSYGSFEESSGYSMYTLDQLHSNVQQWSFNDSADDLQSVAFGNARHW | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 42574696 | 42575776 | + | Maker00038153 | Lcy12g2127 | 650190 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g2127 | 242 | ProSiteProfiles | LOB domain profile. | 6 | 108 | IPR004883 | - | |
Lcy12g2127 | 242 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 105 | IPR004883 | - | |
Lcy12g2127 | 242 | Coils | Coil | 87 | 114 | - | - | |
Lcy12g2127 | 242 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 235 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g2127 | Lcy-Chr12:42574696 | Lcy3g1283 | Lcy-Chr3:38744123 | 9.98E-62 | dispersed | |
Lcy12g2127 | Lcy-Chr12:42574696 | Lcy12g2128 | Lcy-Chr12:42582856 | 2.05E-54 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19317 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g2127 | K13945 | - | csv:101214764 | 392.504 |