Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2128 CTCCTCGTGCGCCCCTTTCTACCTCTAATGGCTTCTTCCTCTTCTTCTTCTTCAAACTCTTCTTCTGTCTCAGCTGGCACTGGCTCTCCTTGCGGCGCATGCAAGTTTCTCCGCCGCAAATGTCTGCCTGATTGCATTTTTGCTCCTTACTTTTGCTCCGAACAAGGCCCTGCAAGGTTCGCCGCCATTCACAAGGTGTTTGGAGCTAGCAATGTCTCCAAGTTGCTCCTCCATGTCCCTGTTCCTGATCGCTGTGAGGCTGTTGTCACCATTGCCTATGAAGCTCAAGCTCGCATTCGTGACCCTGTTTATGGCTGTGTTGCTCATATTTTTGCTCTCCAACAACAGGTGGCATACTTGCAAAGTCAGCTGATGCAAGCCAAGGCTCAACTTGCACAAACCCTGATTGATTCAGGAGGAAACATGGAGATTCAATGGACAGGAAATTTCAATAATCACCCAATTACAGGAATCCCAAATTTTCCAAATTATCAAACTCAAATGATGAACCCTGCAGTTTCCCCACAGAGCTCTCTGGAATCTGCTGCCAACAACGACGAAGCATTATTATTCATGAACAACTTTCAAGAGAGCCAAAGCAGATCCCCAGAAGCTCAATTTCAACAATTTTCAAGAAAAAGACCAGCTTCTTGTCATGCTGATGTTGGAGAGCTCCAAGCTTTGGCCCTCAGAATGATGAGAAACTAA 708 46.33 LLVRPFLPLMASSSSSSSNSSSVSAGTGSPCGACKFLRRKCLPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQSQLMQAKAQLAQTLIDSGGNMEIQWTGNFNNHPITGIPNFPNYQTQMMNPAVSPQSSLESAANNDEALLFMNNFQESQSRSPEAQFQQFSRKRPASCHADVGELQALALRMMRN 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42582856 42584032 - Maker00038175 Lcy12g2128 650191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2128 235 Pfam Lateral organ boundaries (LOB) domain 30 128 IPR004883 -
Lcy12g2128 235 ProSiteProfiles LOB domain profile. 29 131 IPR004883 -
Lcy12g2128 235 PANTHER LOB DOMAIN CONTAINING PROTEIN 26 227 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2128 Lcy-Chr12:42582856 Lcy13g0596 Lcy-Chr13:7782883 2.55E-51 dispersed
Lcy12g2127 Lcy-Chr12:42574696 Lcy12g2128 Lcy-Chr12:42582856 2.05E-54 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19318 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2128 K13944 - csv:101214521 315.079