Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2140 ATGGGTGAGAAGTTTTGGACGAACGAAGAAAAGAGGGTTTTGGTGGAATCAGTTGTTGGAAGTGAAGCTTGTGAGTTCTTGATTTCGTTGGCATCTAGCAATATCTTGCCTGAGGCTTTGCAATTGTCTCTTGGTGATTTGAGTGTGAATCAGGGGCTAAGCCAACTTTTGGATGGTTCGAGTTGGAACTATGCAATCTTTTGGCGTGTGGTTAGCTTGAAATCTGGGGCTTTGGCTTTGATTTGGGGTGATGGGAACTGTCATGATCCAAAGATTGGGATTGCAATTTCTAGTGGGGATGCTCCGGGAGAGAAAGAGGAATTGAAGAGGCAGGTGCTTCGAATGCTTCAATCCTCTTTTGGTGGGTCTGATAAAGATGGATATGGGGCAAGGAGGGAGGAAGCGTCGGATATCGAGATGCTTTACCTAACTTCAATGTATTATAAGTTTATGTGCGACTCAGGAAGTAGTCTTGGGGAGTCGTACAAATCCGGTAAGTCTATATGGGCTTCGGATGTAACGAGTTGTTTGCGTAATTACCAATCGAGAGGGTTTCTAGCTAAAATGGCTGGTTTCCAGACACTGGTCTTTGTACCTGTAAAGTTGGGAGTTGTTGAACTTGGATCTGTTAAATCAATTCCTGAAGATCAGGGTGTTCTGGAGTTGGTTAGAGCTGCCTTTGGGGGATCAAATACTGCCCAATTAAAGGCCTTCCCAAGGATCTTTGGTCATGAATTGAGTTTAGGTGGAACGAAACCTCGATCGCTTAGTATTAATTTTTCACCGAAGTTGGAAGACGATACAAATTTTTCTTCAGAAGGTTATGAGCTGCAGGGTTTAGGTGCTAATCATATATTTGGAAATTCTTCTAACGGGTGTCGAAGTGATGATAATGATGCAAAGATGTTTCCACATGGGAACCAAGAAATTGTTGGGGGTTTCAATGCTCAAACAAGACTTTCGACTTTGGAATTCCCGAGGGATGAGTCGTCCCCTCAAGGAGACGACAGAAAACCTAGGAAGAGAGGGAGAAAGCCTGCTAATGGAAGAGAAGAACCATTGAACCATGTGGAAGCAGAGCGGCAGAGACGTGAGAAGCTTAACCAACGATTCTATGCATTAAGGGCTGTTGTCCCAAATATCTCTAAGATGGACAAGGCCTCTCTCCTCGGCGATGCTATTACGTATATCACCGATCTCCAGATGAAAATTAAGGTTATGGAGACTGAAAAACAGATTGCTAATGGCAGGCAGAAAAACACAGAGGTTGATTTTCAAGCAAGAGAAGAGGATGCAGTTGTGAGGGTGAGTTGTCCACTGGACTCACACCCTGTTTCTAGAGTTATCAAAACATTTAGGGAACATCAAATCGAAGCTCAAGAATCAAACGTCACGACCAGCACCGACAACGACAAAGTTATTCACTCATTCTCCATTAGAGCTGAAAGTGGTGCTGCAGAACAATTGAAGGAGAAGCTGGTGGCTGCCCTGTCAAAATGA 1500 43.93 MGEKFWTNEEKRVLVESVVGSEACEFLISLASSNILPEALQLSLGDLSVNQGLSQLLDGSSWNYAIFWRVVSLKSGALALIWGDGNCHDPKIGIAISSGDAPGEKEELKRQVLRMLQSSFGGSDKDGYGARREEASDIEMLYLTSMYYKFMCDSGSSLGESYKSGKSIWASDVTSCLRNYQSRGFLAKMAGFQTLVFVPVKLGVVELGSVKSIPEDQGVLELVRAAFGGSNTAQLKAFPRIFGHELSLGGTKPRSLSINFSPKLEDDTNFSSEGYELQGLGANHIFGNSSNGCRSDDNDAKMFPHGNQEIVGGFNAQTRLSTLEFPRDESSPQGDDRKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQMKIKVMETEKQIANGRQKNTEVDFQAREEDAVVRVSCPLDSHPVSRVIKTFREHQIEAQESNVTTSTDNDKVIHSFSIRAESGAAEQLKEKLVAALSK 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42672920 42674419 - Maker00037941 Lcy12g2140 650203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2140 499 Pfam Helix-loop-helix DNA-binding domain 355 401 IPR011598 GO:0046983(InterPro)
Lcy12g2140 499 FunFam Transcription factor bHLH13 344 418 - -
Lcy12g2140 499 Gene3D - 344 417 IPR036638 GO:0046983(InterPro)
Lcy12g2140 499 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 354 416 IPR036638 GO:0046983(InterPro)
Lcy12g2140 499 CDD bHLH_AtAIB_like 348 413 - -
Lcy12g2140 499 PANTHER MYC 46 499 IPR045084 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Lcy12g2140 499 SMART finulus 357 406 IPR011598 GO:0046983(InterPro)
Lcy12g2140 499 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 227 IPR025610 -
Lcy12g2140 499 MobiDBLite consensus disorder prediction 329 362 - -
Lcy12g2140 499 MobiDBLite consensus disorder prediction 323 362 - -
Lcy12g2140 499 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2055 Lcy-Chr11:44159398 Lcy12g2140 Lcy-Chr12:42672920 5.51E-84 dispersed
Lcy12g2140 Lcy-Chr12:42672920 Lcy6g2225 Lcy-Chr6:46675617 5.97E-31 dispersed
Lcy12g2140 Lcy-Chr12:42672920 Lcy4g0851 Lcy-Chr4:11756511 1.64E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19321 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2140 - - - 0.0