Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy12g2154 | ATGGCTGGTGATGGATTTGTAATCCCTGTGGAATCTCAGGCGGTTTCGGTGAAGAAGAAGAAGACGACGACGAAGAAGAAGAAGAATACTGCGGTTTCCAGGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGGTTTTGGACGTGGATAAGTATGCGATTATGCAGAGGGTTCAGATTAATGCGAGAGATCTTCGCCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAACGAGTGATTGTTCTCAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAGCTCCATTTACCAAGGACAAGGTGAAGAAGAAGAGCCTCCTACCACCCAAAATGAGTTGGCTGAAAACGAATTTCCATTCGAGTTCCGCGCCTTAGAGGTTGCACTAGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAGCTAGAGACTGATACGTATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAACCGGGTGCAAAAGGTTAGAGATGAACTTGAACAACTTCTCGATGACGATGATGACATGGCGGAACTTTACTTGTCACGAAAAGTAGCTGGCACCCCTGAAAGTGGCTGTGGGACTCCAATTTGGTTTCTTGCTTCTCCTAGGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGCGCGATTACAATTCGAGAAGAGAATGATGTTGAGGAACTAGAAATGCTACTTGAGGCTTATTTTATGCAAATTGAAGGAACATTAAACAAACTAATCACGCTGGACAACCATAGAAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTTTTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCCTTTACATGTCGCTAAGCTCGTATGCACGGTACAAAGGTCTCGTTGGATCTTGA | 1146 | 43.72 | MAGDGFVIPVESQAVSVKKKKTTTKKKKNTAVSRSWVSLDHEGRSTVLDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTSSIYQGQGEEEEPPTTQNELAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGCGTPIWFLASPRDYSKMSKTSRASAITIREENDVEELEMLLEAYFMQIEGTLNKLITLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATLYMSLSSYARYKGLVGS | 381 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 42818631 | 42823490 | - | Maker00038154 | Lcy12g2154 | 650217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy12g2154 | 381 | Gene3D | - | 18 | 107 | - | - | |
| Lcy12g2154 | 381 | Pfam | Magnesium transporter MRS2-like | 41 | 240 | - | - | |
| Lcy12g2154 | 381 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 317 | 368 | IPR045863 | - | |
| Lcy12g2154 | 381 | Coils | Coil | 199 | 226 | - | - | |
| Lcy12g2154 | 381 | FunFam | Magnesium transporter MRS2-1 | 23 | 107 | - | - | |
| Lcy12g2154 | 381 | Gene3D | Magnesium transport protein CorA, transmembrane region | 110 | 311 | - | - | |
| Lcy12g2154 | 381 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 19 | 378 | IPR039204 | GO:0015095(PANTHER)|GO:0015693(PANTHER) | |
| Lcy12g2154 | 381 | CDD | Mrs2_Mfm1p-like | 36 | 378 | IPR039204 | - | |
| Lcy12g2154 | 381 | Gene3D | Magnesium transport protein CorA, transmembrane region | 318 | 372 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy12g2154 | Lcy-Chr12:42818631 | Lcy4g0156 | Lcy-Chr4:1999049 | 1.72E-70 | dispersed | |
| Lcy13g1649 | Lcy-Chr13:35439573 | Lcy12g2154 | Lcy-Chr12:42818631 | 1.36E-65 | transposed | |
| Lcy12g2154 | Lcy-Chr12:42818631 | Lcy13g0329 | Lcy-Chr13:3603206 | 4.98E-158 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy12g2154 | K16075 | - | csv:101220452 | 664.07 |