Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2154 ATGGCTGGTGATGGATTTGTAATCCCTGTGGAATCTCAGGCGGTTTCGGTGAAGAAGAAGAAGACGACGACGAAGAAGAAGAAGAATACTGCGGTTTCCAGGAGCTGGGTTTCGTTGGACCATGAAGGAAGGAGTACGGTTTTGGACGTGGATAAGTATGCGATTATGCAGAGGGTTCAGATTAATGCGAGAGATCTTCGCCTTCTCGATCCTCTCTTGTCGTATCCTTCCACTATCTTGGGCAGAGAACGAGTGATTGTTCTCAATTTGGAGCACATCAAGTCAATTATCACTGCGGACGAGGTGCTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTTGAAGAACTGCAGAGACGGTTGCCTTCCACAAGCTCCATTTACCAAGGACAAGGTGAAGAAGAAGAGCCTCCTACCACCCAAAATGAGTTGGCTGAAAACGAATTTCCATTCGAGTTCCGCGCCTTAGAGGTTGCACTAGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAGCTAGAGACTGATACGTATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAGAGTGCAATGACAAGGTTGACAAACCGGGTGCAAAAGGTTAGAGATGAACTTGAACAACTTCTCGATGACGATGATGACATGGCGGAACTTTACTTGTCACGAAAAGTAGCTGGCACCCCTGAAAGTGGCTGTGGGACTCCAATTTGGTTTCTTGCTTCTCCTAGGGACTATTCAAAGATGTCTAAAACAAGTAGAGCAAGCGCGATTACAATTCGAGAAGAGAATGATGTTGAGGAACTAGAAATGCTACTTGAGGCTTATTTTATGCAAATTGAAGGAACATTAAACAAACTAATCACGCTGGACAACCATAGAAATCAACTTATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCAATATTTGGAATGAATATCCCATATACCTGGAAGGAAGATCATGAACATGTTTTCAAATGGGTGGTCATCCTGACAGGAATAGTTTGTGCAACCCTTTACATGTCGCTAAGCTCGTATGCACGGTACAAAGGTCTCGTTGGATCTTGA 1146 43.72 MAGDGFVIPVESQAVSVKKKKTTTKKKKNTAVSRSWVSLDHEGRSTVLDVDKYAIMQRVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTSSIYQGQGEEEEPPTTQNELAENEFPFEFRALEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGCGTPIWFLASPRDYSKMSKTSRASAITIREENDVEELEMLLEAYFMQIEGTLNKLITLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWKEDHEHVFKWVVILTGIVCATLYMSLSSYARYKGLVGS 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42818631 42823490 - Maker00038154 Lcy12g2154 650217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2154 381 Gene3D - 18 107 - -
Lcy12g2154 381 Pfam Magnesium transporter MRS2-like 41 240 - -
Lcy12g2154 381 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 317 368 IPR045863 -
Lcy12g2154 381 Coils Coil 199 226 - -
Lcy12g2154 381 FunFam Magnesium transporter MRS2-1 23 107 - -
Lcy12g2154 381 Gene3D Magnesium transport protein CorA, transmembrane region 110 311 - -
Lcy12g2154 381 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 19 378 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lcy12g2154 381 CDD Mrs2_Mfm1p-like 36 378 IPR039204 -
Lcy12g2154 381 Gene3D Magnesium transport protein CorA, transmembrane region 318 372 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2154 K16075 - - csv:101220452 664.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2154 Lcy-Chr12:42818631 Lcy4g0156 Lcy-Chr4:1999049 1.72E-70 dispersed
Lcy13g1649 Lcy-Chr13:35439573 Lcy12g2154 Lcy-Chr12:42818631 1.36E-65 transposed
Lcy12g2154 Lcy-Chr12:42818631 Lcy13g0329 Lcy-Chr13:3603206 4.98E-158 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g0512 . 1 448 MRS2 Gene Family AT1G16010 85.3 1.5e-207 719.5
Lcy13g1649 . 3 401 MRS2 Gene Family AT1G16010 50.6 4.2e-106 382.5
Lcy13g0329 . 1 400 MRS2 Gene Family AT5G64560 71.6 9.4e-147 517.3
Lcy12g2154 . 1 354 MRS2 Gene Family AT5G64560 65.3 1.1e-118 424.1
Lcy4g0156 . 14 497 MRS2 Gene Family AT3G19640 63.0 1.9e-152 536.6
Lcy6g0580 . 59 560 MRS2 Gene Family AT3G58970 54.3 6.6e-128 454.9
Lcy13g1649 . 5 401 MRS2 Gene Family AT2G03620 64.9 4.3e-132 468.8
Lcy12g0512 . 13 448 MRS2 Gene Family AT2G03620 53.4 3.4e-113 406.0
Lcy13g0329 . 1 362 MRS2 Gene Family AT5G09690 65.1 1.6e-115 413.3
Lcy12g2154 . 1 316 MRS2 Gene Family AT5G09690 61.1 1.2e-97 354.0
Lcy12g0512 . 40 383 MRS2 Gene Family AT5G09690 50.6 9.3e-79 291.2
Lcy13g0329 . 23 315 MRS2 Gene Family AT5G09720 57.8 1.2e-77 287.3
Lcy12g2154 . 33 291 MRS2 Gene Family AT5G09720 60.2 9.7e-75 277.7
Lcy12g0512 . 1 448 MRS2 Gene Family AT1G80900 83.0 1.7e-200 696.0
Lcy13g1649 . 1 401 MRS2 Gene Family AT1G80900 51.4 8.8e-104 374.8
Lcy5g1032 . 16 466 MRS2 Gene Family AT5G22830 67.1 3.0e-155 545.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58