Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2166 ATGAGTAACTATGGCTTTCCAGAAGATCGAAGTAACCCAATTCTATACGATTCTTCTATGGTTTATGGTGGACACGATAACCTACTGCTTTGCGGAATCGTCGACGTGCTTGATGGTGTACAAGGAAGGCGGTGCTCCGGCTGTATTTCAATCCCCGAAATGCCCTCTCTGGAAGCTCTCCGACTACACTTTTCAATCTCCCAGCGCTCCTCATTGTCAAATTGCAATGCATCAGGGTCGAAGAAAGTACCAGGAGGATCGCACTCTTTGTGCTCTCGACGTTCGAATTCCCTTCCTAATTATTTCTCCTGTAAGGGACTACTAGACACACACATATCTCCACAATGGTATGATATTGTCCACTTTGGGCATACGCCCTCATGGCTTTGCTTTTGGTTTACCCCAAAATGCCTCATACCAATGGAGATACTTGTCCTCCCTTATAAACCCATGATCATCCCCTTATCTAGCCGATGTAAAGCAGGTCTTACGGAGGTCCCTGTGGGAATCATAGCAGTTTTTGATGGTCATAATGGAGCTGAAGCTAGTGAGATGGCTTCTAAGATTTTGTTGGAGTATTTTGTCGTGCATGCTTATTTTCTTCTCGATGCCACTTATTCTGGAATTTTCAAGAGATCCATCAAGACATTTTCAAATGAGAGGGAACATGGTACCATCTTTAATCAGCTTAGTTGGAATGAAGAAATCAGTAACCGTGATCTGGAACTTGGAAGGCTTAAATACTTACTTCCAGTAGATTTTGATGATGATTTTCATTTGGAAATTTTGAAAGAAGCACTGTTGAGAGCTATACAAGATATTGATAAAACATTTTCCAAAGAAGCACATAAAAATAATCTCGTTTCGGGTTCTACTGCTACCATTATATTATTAGCAGATGCACAAATTTTGGTTGCAAACATTGGTGACTCAAAGGCTTTCTTGTGCTCTGAAAAATTTCAGTCACCTGCAGAGGCTAAAGCCACCTTTTTAAGGTTATACAAGCAAAAAAGATATAGCGGCACCTCACATGCAAGGGGCTATGGAAATTCTAGACCAGACTCATTTGATGGGCTGACACATTTTTATGTCAAAGAATTGACTAGAGATCATCATCCAGATAGAGAGGATGAAAGATCTAGGGTGGAGATTGCTGGGGGTCATGTTGTTGATTGGGGTGGTGTACCTCGAGTAAATGGACAGTTGGCTATAACTAGAGCAATTGGTGATGTGTCTTTTAAAAGCTATGGGGTTATATCTGCACCAGAAGTGACTGACTGGCAACCTTTGTCTACCAACGATAGCTATTTGGTGGCTTCATCTGATGGCATTTTTGAGAAACTGAGCTCACAAGACGTTTGTGACTTGTTGTGGGAAGTACACAATGATGGTATGTCGAGTTCTGAACATTCTCCTTCATGCTCATACTCATTGGCAGATTGCATTGTTAGCACTGCCTTTGAAAGGGGCAGTATGGATAACATGGCTGCTATTGTGGTTCCTTTAAGACCTGCTATTTCTTCTCGGAGGTTTCAGGAGGGAAGCTTTTTTGCACAGAGAGACTCACGTTTTCCCATATCTGGGATAGAAAAGCTTATTAAAGGGCACTCAGCCAAGGGCGTCTCTTCCAATGCTGTGCAATTGGAACATTCTCATCCAGTTGTGTCCAAGTTCAAGAGATTATTAGTAAGGCTTAAAGAAAAGTGTATTTGA 1713 41.8 MSNYGFPEDRSNPILYDSSMVYGGHDNLLLCGIVDVLDGVQGRRCSGCISIPEMPSLEALRLHFSISQRSSLSNCNASGSKKVPGGSHSLCSRRSNSLPNYFSCKGLLDTHISPQWYDIVHFGHTPSWLCFWFTPKCLIPMEILVLPYKPMIIPLSSRCKAGLTEVPVGIIAVFDGHNGAEASEMASKILLEYFVVHAYFLLDATYSGIFKRSIKTFSNEREHGTIFNQLSWNEEISNRDLELGRLKYLLPVDFDDDFHLEILKEALLRAIQDIDKTFSKEAHKNNLVSGSTATIILLADAQILVANIGDSKAFLCSEKFQSPAEAKATFLRLYKQKRYSGTSHARGYGNSRPDSFDGLTHFYVKELTRDHHPDREDERSRVEIAGGHVVDWGGVPRVNGQLAITRAIGDVSFKSYGVISAPEVTDWQPLSTNDSYLVASSDGIFEKLSSQDVCDLLWEVHNDGMSSSEHSPSCSYSLADCIVSTAFERGSMDNMAAIVVPLRPAISSRRFQEGSFFAQRDSRFPISGIEKLIKGHSAKGVSSNAVQLEHSHPVVSKFKRLLVRLKEKCI 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42969156 42978634 + Maker00038072 Lcy12g2166 650229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2166 570 SUPERFAMILY PP2C-like 167 503 IPR036457 -
Lcy12g2166 570 PANTHER PROTEIN PHOSPHATASE 165 501 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy12g2166 570 ProSiteProfiles PPM-type phosphatase domain profile. 152 502 IPR001932 -
Lcy12g2166 570 Pfam Protein phosphatase 2C 365 495 IPR001932 -
Lcy12g2166 570 Pfam Protein phosphatase 2C 263 318 IPR001932 -
Lcy12g2166 570 SMART PP2C_4 126 500 IPR001932 -
Lcy12g2166 570 CDD PP2Cc 159 502 IPR001932 -
Lcy12g2166 570 Gene3D - 152 507 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2166 Lcy-Chr12:42969156 Lcy3g0744 Lcy-Chr3:26819933 6.25E-27 dispersed
Lcy12g2166 Lcy-Chr12:42969156 Lcy13g0279 Lcy-Chr13:3032075 1.08E-27 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2166 - - - 0.0