Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2203 ATGTTGGTTTGGGGAGATGGATTCTACAATGGACCCATCAAGACCACCAAGACGCTGCACCCCGCCGCCACCCATCTCACCGCCCAACAACAACAACCACCCTCTCGAACCCATCAGCTCAGGGATCTCTACAACTCCTTATCCGCCGCCGACACAGACACTACCCTCCGCCGCCCCTCCGCCGCTCTCTCTCCGGAGGACTTGACGGAGTCCGAGTGGTTCTATTTGTTGTGTCTCTCCTTCTCTTTTCCTCCGGGCCGAGGATTGCCTGGAAACGCATTTGCCAACAACACACATGTGTGGATTACAGGCGCAAATGACATTGACACCAAAATTTTCTCCAGAGCTATTCTTGCTAAGAGTGCTCGCATAAAGACAGTGGTTTGCATTCCTCTTATGGATGGTGTGGTTGAACTAGGCACCACAGATAAGGTGATAGAGAATGAATTTGTTTTAGTTGAGCTCAAAAGAAACCCAGTCGGCAGCACAAAAACCAGCACTCTCGGAGCTCTCGACATCGAATTCTGCCACTTCATTGGAGCATTATAA 549 50.64 MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPSRTHQLRDLYNSLSAADTDTTLRRPSAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTKIFSRAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELKRNPVGSTKTSTLGALDIEFCHFIGAL 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43272674 43274623 - Maker00038163 Lcy12g2203 650266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2203 182 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 1 156 IPR025610 -
Lcy12g2203 182 PANTHER TRANSCRIPTION FACTOR TT8 1 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2203 Lcy-Chr12:43272674 Lcy13g0686 Lcy-Chr13:9856444 1.64E-40 dispersed
Lcy12g2203 Lcy-Chr12:43272674 Lcy6g2225 Lcy-Chr6:46675617 2.06E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2203 - - - 0.0