Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0010 CCCGATCAGAGAAGAAAGGCAAGTTTACGCCTCTTTCTTATGGGACATCTTCTTTTTCTCCGTTTAGTTAAGCTGGAATTTGCGTTAGGCACGACCTTTTCACCTGATGCGAAGAAATATGTAGCCAGCCATCTAAATACCTTGGCGGCTTGGCCTACCCCATCAAACGCTTTTTCGTCTATAGATGTGGATTTCTTCACAGAATATGGTGAAGGGAGCAGGTATAGAATAGAGGAAGTAATTGGTAAAGGAAGTTATGGTGTTGTTTGCTCTGCATATGATACTCATACTGGAGATAAAGTTGCAATTAAGAAAATCAATGATATCTTTGAGCATGTCTCTGATGCAACTCGCATTCTTCGTGAGATAAAACTCTTAAGACTATTGAGACATCCAGACATTGTGGAGATAAAGCACATCCTACTACCTCCATCTAGAAGGGAATTCAAGGATATATATGTCGTGTTTGAGCTCATGGAGTCTGATTTACACCAAGTTATCAAAGCAAATGACGATTTGACTCCAGAACATTATCAGTTCTTTCTATATCAGCTTCTTCGTGGCTTGAAATATATACACACAGCAAATGTCTTCCACCGGGACCTAAAACCCAAAAATATCTTAGCAAATGCTGACTGCAAACTCAAGATCTGTGACTTTGGTCTAGCAAGAGTTGCTTTTAATGATACTCCTACTGCTATTTTCTGGACTGACTATGTCGCAACAAGGTGGTACAGGGCTCCTGAACTGTGTGGTTCATTTTTCTCAAAGTATACACCAGCAATAGATATATGGAGCATTGGTTGCATCTTTGCGGAGCTTTTAACTGGAAAACCACTTTTCCCTGGAAAGAATGTCGTCCACCAATTAGATTTGATGACAGATTTTCTGGGAACCCCAAATGCAGAAGCCATAGCCAGGGTACGAAACGAGAAAGCTCGGAGATACTTAAGCAGTATGCGAAAGAAGAAGCCTGTTCCTTTCTCCCAGAAGTTTCCTCATGCAGATCCACTTGCACTTCGCTTATTGGAAAGAATGTTGGCTTTTGAGCCGAAGGATCGGCCTACAGCAGAGGAGGCCCTTGCAGATCCATATTTTAAAGGCTTGGCGAAGGTTGAGAGAGAGCCATCGGCTCAACCTGTTACTAAGATGGAATTTGAATTTGAGAGACGAAGGATAACCAAAGAAGATGTTAGGGAGCTTATTTACCGGGAGATTCTCGAGTACCATCCAAGATGGTTAGGTGGTTGTCCTGTGAGAATAATTGAGGTGTGTGCAATCTGTGCAGTTGATCATTTTAAGAAGCAGTTTGCCTACCTTGAGGAACACTATGGAAATGGTGCAACTGTTACTCCTCCTGAAAGACAACATGCATCCTTGCCTAGGCCATGTGTTTTATATTCAGATAGCATGGTGCAGAACTCGGCACAAGTTGCGAATGACCTATCCAAATGTTCCATCAAAGAAGTTGAAAGGCCACAAGTTGATAGGACTTGCAATATTCCTTTGACTAGAGTTCCTATTCAAGTTCCTCATCTATTCAAGGTGAGAGTGTTCCTATCCAATTGCATGCCTCTATATTTCCCCACATGTGAAGCAGGCAATGCTGCAAGGCCTGGGAAAGTTGTCGGCTCTGTGTTGCGATATAACAACTGTGGAGCAACCGCAGCAGTGGCACCAGAAGTTCTTGAGCAGAGAAGGATGACCAGAAACCCTTCTGTTCCACCGCAGTACGCCGCTAACAACTGTTCATATCCACGAAGAAACTCATCTTGTAAAAACGAAAGGGCTGAAGATGAAGCCATTGAAGGTCCAAACGGGTTGCAGCCAAAACCTCAGTTCATAGCTAGGAAAGTTGCTGCTGCTCAAGGTGGACCAGGAAATAACTGGTACTGA 1896 43.09 PDQRRKASLRLFLMGHLLFLRLVKLEFALGTTFSPDAKKYVASHLNTLAAWPTPSNAFSSIDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGDKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPNAEAIARVRNEKARRYLSSMRKKKPVPFSQKFPHADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPRWLGGCPVRIIEVCAICAVDHFKKQFAYLEEHYGNGATVTPPERQHASLPRPCVLYSDSMVQNSAQVANDLSKCSIKEVERPQVDRTCNIPLTRVPIQVPHLFKVRVFLSNCMPLYFPTCEAGNAARPGKVVGSVLRYNNCGATAAVAPEVLEQRRMTRNPSVPPQYAANNCSYPRRNSSCKNERAEDEAIEGPNGLQPKPQFIARKVAAAQGGPGNNWY 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 160478 166291 + Maker00009387 Lcy13g0010 650315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0010 631 ProSitePatterns Protein kinases ATP-binding region signature. 81 105 IPR017441 GO:0005524(InterPro)
Lcy13g0010 631 Gene3D Transferase(Phosphotransferase) domain 1 161 389 - -
Lcy13g0010 631 Pfam Protein kinase domain 75 366 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0010 631 CDD STKc_TDY_MAPK 74 411 - -
Lcy13g0010 631 Gene3D Phosphorylase Kinase; domain 1 90 411 - -
Lcy13g0010 631 ProSiteProfiles Protein kinase domain profile. 75 366 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0010 631 MobiDBLite consensus disorder prediction 587 609 - -
Lcy13g0010 631 FunFam Mitogen-activated protein kinase 65 169 - -
Lcy13g0010 631 FunFam Mitogen-activated protein kinase 161 389 - -
Lcy13g0010 631 SUPERFAMILY Protein kinase-like (PK-like) 72 370 IPR011009 -
Lcy13g0010 631 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 72 407 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lcy13g0010 631 ProSitePatterns MAP kinase signature. 110 213 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0010 631 SMART serkin_6 75 366 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0010 Lcy-Chr13:160478 Lcy13g0234 Lcy-Chr13:2461168 0 dispersed
Lcy13g0010 Lcy-Chr13:160478 Lcy4g0766 Lcy-Chr4:9168547 1.90E-233 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65539 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0010 - - - 0.0