Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0027 ATGCTAACGGGCGTGCGCGTGGCGGGGCTTATGCGCGCACCAGCCCCAACCATCAGCGCCGCTTTCCTCTTCCTCTTCCTCTCCTCATGCATAATGGTCGTCTTGTCGGCTTCTGACGCCGAAACTCTCCTTCAATTCAAGCGCTCTTTGACCTCCGCCGCGGCTCTCCACAACTGGGATCCCTCCATCCCTCCTTGCGACAACCACAAGGCCAATTGGGCGGGTGTGCTTTGTTTGAATGGCTATGTTAGGGGTCTACGGCTTGAGAATATGGGGCTTAAGGGCGAGGTTGATGTGAATCCCCTCGTTTCTTTGACTCATTTGCGCACCCTCAGCTTCATGAATAACACCTTGGTTGGCCCTTGGCCTCCTGTTATAAGCAAATTAGGCAGTCTACGGTCCGTTTATCTTTCCTATAACCATTTTTCAGGAGAAATTCCAGACGATGCCTTTACGGGTATGAAATTTTTGAAGAAAGTGTTTTTGACCAATAATGAATTCAACGGCCAAATTCCCTCATCTCTCGCTTCACTGTCTAGGCTTATGGAGTTGAGACTTGATGGAAACAAATTCAAAGGCCAAGTCCCCCACCTTGAAATGGATACTTTGAAGAAACTTAACGTTTCCAATAATGAATTGGAGGGCCCCATACCTAGTAGCTTAAGCCATATGGATCCTACCTGTTTTTCAGGTAACCGTAATCTGTGTGGGACTCCTCTTCCAGCATGCGAGAAATCCACGTTGTCATCCTCGGGGCTGCTGAAAATCGCGGTGATATTGATAGTTTTGGGGGTAACTTTAGCAGTGATAGCTGCAATTTTCATCATATTGAATTTAAGGAAGCAGCCTGCGTTGCAACTAGGGAAGGGGAATGCAGGAGGCATTATTGAAGAGGAGAACAACAAGTACATGAGTAAGCAAACAGCGGCGGCGGATGCATACAGATCCACGGAGTCGTCGGTGGCACAGGCTTCAAAGAGGGGGGCAGAACATGGCAAACTTTTGTTCGTGAGGGATGACAGGGAGAGGTTCGACTTACAGGACCTGCTCAGAGCGTCCGCCGAAATATTGGGGAGTGGTTCATTCGGCTCTTCCTACAAAGCAACTATACTTTGTAATGCGGTGGTGGTGAAGCGATACAAGCATATGAACAACGTAGGAAGAGAGGATTTTCATGAGTACATGAGAAGGCTAGGCAGGTTGACGCATCCAAATCTACTGCCGTTGGTTGCCTATTATTACAGGAAGGAAGAGAAGCTCTTGATTTCCGACTTTGTGGATAATGGGAGTTTGGCCAGCCATCTGCATGGGAACCACAACTTGGAGGAGCCAGGGCTGGATTGGGCCACCAGGTTGAAGATCATCAGAGGCATAGCAAGAGGGCTGTCTTACCTCTACACCTCCCTGCCCAACATAGTAGCGCCCCACGGCCATCTCAAATCTTCAAATGTGCTGCTAGACGACTCCCTGGACCCTCTGCTCACGGACTACGGTCTAATCCCAGTTGCCAACCTAGAGCACGGACAGACACTGATGATGGCCTACAAATCACCTGAGTATGCCCACCTGGGCCGCATAACCAAGAAGACCGACATCTGGAGCTTCGGAATTGTGATACTGGAGATGTTGACGGGAAGGTTCCCAGAGAACTACCTCACCCGGAATCATGACACCAAAGCAGACCTTGCCACTTGGGTCAACAACATGATCAAGGAAAAGAAGACGGCACAAGTCTTCGATGCAGAGCTGGGGAGAGCCAGGGAGAGCAACAAAGGCGAGTTGTTGAAGATGCTCAAGATTGGCTTAAGTTGCTGTGAGGAAGATGTGGACAGAAGGTTGGACTTGAATGAGGTAGTAACCCAAATTGAAGAGTTGAACGAGGCAGACTTGAGTGATGACGGAGATAACTTCTCCCCCACGGCTCCCCACACTCAAATTCCTGTTTGA 1947 49.46 MLTGVRVAGLMRAPAPTISAAFLFLFLSSCIMVVLSASDAETLLQFKRSLTSAAALHNWDPSIPPCDNHKANWAGVLCLNGYVRGLRLENMGLKGEVDVNPLVSLTHLRTLSFMNNTLVGPWPPVISKLGSLRSVYLSYNHFSGEIPDDAFTGMKFLKKVFLTNNEFNGQIPSSLASLSRLMELRLDGNKFKGQVPHLEMDTLKKLNVSNNELEGPIPSSLSHMDPTCFSGNRNLCGTPLPACEKSTLSSSGLLKIAVILIVLGVTLAVIAAIFIILNLRKQPALQLGKGNAGGIIEEENNKYMSKQTAAADAYRSTESSVAQASKRGAEHGKLLFVRDDRERFDLQDLLRASAEILGSGSFGSSYKATILCNAVVVKRYKHMNNVGREDFHEYMRRLGRLTHPNLLPLVAYYYRKEEKLLISDFVDNGSLASHLHGNHNLEEPGLDWATRLKIIRGIARGLSYLYTSLPNIVAPHGHLKSSNVLLDDSLDPLLTDYGLIPVANLEHGQTLMMAYKSPEYAHLGRITKKTDIWSFGIVILEMLTGRFPENYLTRNHDTKADLATWVNNMIKEKKTAQVFDAELGRARESNKGELLKMLKIGLSCCEEDVDRRLDLNEVVTQIEELNEADLSDDGDNFSPTAPHTQIPV 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 390357 393141 + Maker00023568 Lcy13g0027 650332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0027 648 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Lcy13g0027 648 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 34 627 IPR046959 -
Lcy13g0027 648 Pfam Protein tyrosine and serine/threonine kinase 355 621 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0027 648 FunFam Pollen receptor-like kinase 1 426 636 - -
Lcy13g0027 648 FunFam pollen receptor-like kinase 1 320 425 - -
Lcy13g0027 648 SUPERFAMILY L domain-like 37 235 - -
Lcy13g0027 648 Gene3D Ribonuclease Inhibitor 200 247 IPR032675 -
Lcy13g0027 648 Gene3D Phosphorylase Kinase; domain 1 316 425 - -
Lcy13g0027 648 Gene3D Ribonuclease Inhibitor 36 199 IPR032675 -
Lcy13g0027 648 MobiDBLite consensus disorder prediction 629 648 - -
Lcy13g0027 648 SUPERFAMILY Protein kinase-like (PK-like) 355 625 IPR011009 -
Lcy13g0027 648 Gene3D Transferase(Phosphotransferase) domain 1 426 638 - -
Lcy13g0027 648 Pfam Leucine Rich Repeat 203 224 IPR001611 GO:0005515(InterPro)
Lcy13g0027 648 Pfam Leucine rich repeat 131 191 IPR001611 GO:0005515(InterPro)
Lcy13g0027 648 ProSiteProfiles Protein kinase domain profile. 351 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0027 648 Pfam Leucine rich repeat N-terminal domain 37 78 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0027 Lcy-Chr13:390357 Lcy13g1363 Lcy-Chr13:31701227 3.34E-136 dispersed
Lcy13g0027 Lcy-Chr13:390357 Lcy2g0359 Lcy-Chr2:2949894 8.06E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65540 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0027 K28077 - csv:101203276 1051.2