Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0045 ATGCAACTAGTACCAAATAATGATGAAAATAAAGATGATATTCTAGAACGTGCGCCCATTTTAAGTCAATTGGATTTTCTGCCACAGTCCGTGGAGTCATCATCCTCTGCTGAGATTATAGCTATAGGGAGAGAGAGCTCTGTTAGTGATGATGATTTACACAATCTTAATGTTGATGAAACTTGTCATCTGGTGAATGCAGACCAACCGCAATGTCGGATATGCCTTGATACTGGAGGAGAAGATTTAATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTTCGTCCATAGATCATGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTTGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTAAGACTGAAGTTTCAGTTTCTTGTTGCTAGGGACCATGCTTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTCTACGGAGAGGAACTAAGGGAAATGTTTGGTTACGAAGAACACCCATATGGGTTCTATGCTATGGCTGTCTTGGCTATCATCTTGGTTGGTTTACTCTATGGTTTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCCAAGCAAGAACTGACAAAGGAATATATAGTCGAAGATCGAGAACATAACAAAAATGTTCCTGAACTGGACCCCAGTCATGTTATGGAGCTAAGGATGTTGGGCCTGTATTAA 780 42.05 MQLVPNNDENKDDILERAPILSQLDFLPQSVESSSSAEIIAIGRESSVSDDDLHNLNVDETCHLVNADQPQCRICLDTGGEDLIAPCHCKGTQKFVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 573683 578597 - Maker00023482 Lcy13g0045 650350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0045 259 SUPERFAMILY RING/U-box 67 123 - -
Lcy13g0045 259 Pfam RING-variant domain 72 119 IPR011016 GO:0008270(InterPro)
Lcy13g0045 259 ProSiteProfiles Zinc finger RING-CH-type profile. 64 126 IPR011016 GO:0008270(InterPro)
Lcy13g0045 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 124 IPR013083 -
Lcy13g0045 259 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 191 259 - -
Lcy13g0045 259 CDD RING_CH-C4HC3_MARCH 72 120 - -
Lcy13g0045 259 SMART ringv_2 71 120 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0045 Lcy-Chr13:573683 Lcy2g0769 Lcy-Chr2:6834968 1.78E-38 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0045 - - - 0.0