Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0060 ATGTCCATCTGGAAATACAGTCACAAACGAAAACGCTACCTCCGCCTTTGCTTCCCCAATCATCACTCACTTCCAGACAAAATCTTCCTCCATAGTCCCTCCATAGCTTTTCTCTTTCACTGCCCACACAACGCAAAGAGCTTCCACTCCGACGGCAAACCACTCGCTGACCATATCTCAGCTGCAGACAGGTTTCCTTCTCCGGCTTTTGATTCTTCTTTGTTGATGGAGCCATCTCATGAAGTTTCAGAAACGCCGGAGCAGATTATACTACGCTGGGACTCCGCCGCGCCGGAGGAAGTTAAGGATAAGATGATTTTCGACTCTGACAGGGAAGAGATCGACCGATACTTGCAGGCCGTCGACGAAATCCAGAGGTCGTTGTCGTCGGCTTCCATATCGGACGATCACAACAAAGTCGATTCCACTATGCAGATCGCCATGGCCAGGCTTGAGGATGAGTTCCGTCACATTTTGTCCAGTCACACCACTCCGATCGAGGTCGACTCGCTTACTGATCCGAGTCCCTCTTCCCGGTCCATGTCGACTAGTGCGAGTGGTGTATTCGAGGATGACAACGACGAGGAAGCGGATTTACCGGAAGTTCAGCTTGATTTAAGTGGCAGTCCGAGTTTTGGGTCGAGTGGACGATCGAGCTATCGGGCGACGAGCAGTATTCGTGAAATTGATCTGATACCTTCGGATGCGATCATCGATCTGCGAAGTATTGCTGAGCGGATGATATCGGCGGGGTACCTGCGCGAGTGCATCCAAGTCTATGGCAGTGTGCGAAAGTCCACCTTCGACTCCAGCTTCCGACGGCTCGGAATTGAGAAGTTGAGCATTGGAGATATCCAGAGGCTGGATTGGAACGAGCTGGAGACGAAGATCAGAAGGTGGATTAGAGCAGCAAAGGTTTCTATTAGGACTTTGTTTTCCAGCGAGAAGAAGCTCTGCGAGCAAATCTTTTATGGCATAGGGACCGCCATAGACGATGCTTGTTTCATGGAGACTGTAAAAGGCCCTGTGACTCAGTTGTTCAATTTCGCCGAAGCGATCAGTATAAGCCGCAGATCGCCGGAGAAGCTGTTCAAGATTCTAGACCTACACGATGCCTTAACGGATTTGATACCCGACATTGATGTGATATTCGAATCAAAATCCGCGGAATATATTCGGATTCAGGCGGCGGAGATATTGTCGCGGCTGGCGGAGGCCGTCAGAGGGACTTTATCGGAGTTTGAAAACGCTGTGCTGCGGGAGCCGTCGCTGCATCCGGTGCCTGGCGGGACGCTTCATCCGTTGACAAGGTATGTTATGAACTATGTGAGTCTGATTTCCGATTACAAAGTGACCTTAGACGAGCTCATCGTGTCCAAACCATCGACGGGCTCGAGGTACTCCGCCGACCCCACAACTCCAGATATGGACTTCGCCGAGCTAGAGGGCAAAACGCCATTAGCGCTCCATCTGATATGGAGCATCGTGATTCTGCAGTTCAATTTGGAGGGTAAGTCCAGGCACTACAGAGACCCTTCTCTAGCTCATCTCTTCATCATGAACAACGTTCATTACATCGTTCAGAAGATAAAAGGATCCCCAGAATTGCGAGAAATGATCGGAGACGTTTATCTGAAAAGGCTGACTGGGAAGTATCGACAGGCGGCGACAAACTACGAGAGAACAACGTGGGTGAATGTGTTGTATTGCCTGCGAAATGAAGGGTTGAATGTGGGCGGGAGCTTCTCTTCCGGCCCCTCAAAGAGCGCTATTAGAGAGAGATTCAAGACTTTCAACGCTATGTTTGAGGAGGTACACAGGACACAATCGGCATGGTTGATACCAGATTCTCAGCTGAGGGAGGAGCTTCGCATATCCATAACTGAGAAGTTGATCCCAGCTTACAGGTCGTTTCTTGGCCTACATGGCCACCACATAGAGAGTGGAAGGCACCCAGAAAATTACATTAAGTACTCGGTCGAGGAACTGGAAAATGCCATCTTGGATTTCTTTGAGGGTTGCTCAGTGACCCATAACATGAGAAGGAGATCTCACTGA 2058 49.95 MSIWKYSHKRKRYLRLCFPNHHSLPDKIFLHSPSIAFLFHCPHNAKSFHSDGKPLADHISAADRFPSPAFDSSLLMEPSHEVSETPEQIILRWDSAAPEEVKDKMIFDSDREEIDRYLQAVDEIQRSLSSASISDDHNKVDSTMQIAMARLEDEFRHILSSHTTPIEVDSLTDPSPSSRSMSTSASGVFEDDNDEEADLPEVQLDLSGSPSFGSSGRSSYRATSSIREIDLIPSDAIIDLRSIAERMISAGYLRECIQVYGSVRKSTFDSSFRRLGIEKLSIGDIQRLDWNELETKIRRWIRAAKVSIRTLFSSEKKLCEQIFYGIGTAIDDACFMETVKGPVTQLFNFAEAISISRRSPEKLFKILDLHDALTDLIPDIDVIFESKSAEYIRIQAAEILSRLAEAVRGTLSEFENAVLREPSLHPVPGGTLHPLTRYVMNYVSLISDYKVTLDELIVSKPSTGSRYSADPTTPDMDFAELEGKTPLALHLIWSIVILQFNLEGKSRHYRDPSLAHLFIMNNVHYIVQKIKGSPELREMIGDVYLKRLTGKYRQAATNYERTTWVNVLYCLRNEGLNVGGSFSSGPSKSAIRERFKTFNAMFEEVHRTQSAWLIPDSQLREELRISITEKLIPAYRSFLGLHGHHIESGRHPENYIKYSVEELENAILDFFEGCSVTHNMRRRSH 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 674209 676266 - Maker00023736 Lcy13g0060 650365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0060 685 PANTHER EXOCYST COMPLEX PROTEIN EXO70 84 673 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Lcy13g0060 685 Pfam Exo70 exocyst complex subunit C-terminal 299 669 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lcy13g0060 685 SUPERFAMILY Cullin repeat-like 82 672 IPR016159 -
Lcy13g0060 685 MobiDBLite consensus disorder prediction 166 194 - -
Lcy13g0060 685 MobiDBLite consensus disorder prediction 166 188 - -
Lcy13g0060 685 Gene3D Exocyst complex component Exo70 89 194 - -
Lcy13g0060 685 Gene3D Exocyst complex component Exo70 209 681 - -
Lcy13g0060 685 Pfam Exocyst complex component Exo70 N-terminal 87 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0060 K07195 - - csv:101204229 1125.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1075 Lcy-Chr11:32426632 Lcy13g0060 Lcy-Chr13:674209 1.33E-102 dispersed
Lcy13g0060 Lcy-Chr13:674209 Lcy5g2120 Lcy-Chr5:44244463 2.34E-133 dispersed
Lcy13g0060 Lcy-Chr13:674209 Lcy2g0063 Lcy-Chr2:462483 2.50E-147 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy7g0563 . 10 809 EXO70 exocyst subunit family AT5G03540 62.5 6.7e-265 910.6
Lcy1g1210 . 1 642 EXO70 exocyst subunit family AT5G03540 67.3 9.4e-243 837.0
Lcy1g1210 . 1 645 EXO70 exocyst subunit family AT5G52340 73.6 6.8e-267 917.1
Lcy7g0563 . 12 809 EXO70 exocyst subunit family AT5G52340 59.9 6.2e-252 867.5
Lcy1g1210 . 186 645 EXO70 exocyst subunit family AT5G52350 61.8 2.6e-156 549.7
Lcy7g0563 . 241 809 EXO70 exocyst subunit family AT5G52350 52.6 3.4e-156 549.3
Lcy11g0045 . 1 624 EXO70 exocyst subunit family AT5G58430 67.5 1.0e-246 850.1
Lcy11g0045 . 1 623 EXO70 exocyst subunit family AT1G07000 51.2 5.4e-173 605.1
Lcy11g1075 . 55 668 EXO70 exocyst subunit family AT5G13150 53.6 2.6e-176 616.3
Lcy10g1115 . 110 724 EXO70 exocyst subunit family AT5G13990 54.3 3.7e-189 659.1
Lcy13g0060 . 84 686 EXO70 exocyst subunit family AT1G72470 65.0 1.7e-217 753.1
Lcy13g0060 . 84 682 EXO70 exocyst subunit family AT1G54090 63.1 3.3e-213 738.8
Lcy13g0060 . 84 683 EXO70 exocyst subunit family AT3G14090 65.4 2.7e-223 772.3
Lcy2g0063 . 13 650 EXO70 exocyst subunit family AT5G50380 62.7 1.0e-228 790.4
Lcy5g2120 . 18 649 EXO70 exocyst subunit family AT5G50380 62.3 7.0e-217 751.1
Lcy13g1355 . 15 683 EXO70 exocyst subunit family AT4G31540 74.0 6.4e-295 1010.4
Lcy7g0784 . 58 614 EXO70 exocyst subunit family AT3G55150 51.3 6.6e-153 538.5
Lcy7g0784 . 60 611 EXO70 exocyst subunit family AT2G39380 52.2 2.2e-156 550.1
Lcy5g0233 . 25 631 EXO70 exocyst subunit family AT3G09520 55.1 2.8e-180 629.4
Lcy2g1554 . 53 581 EXO70 exocyst subunit family AT5G59730 51.2 4.7e-143 505.8
Lcy2g1606 . 53 471 EXO70 exocyst subunit family AT5G59730 52.9 1.0e-113 408.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007044 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 36