Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0060 ATGTCCATCTGGAAATACAGTCACAAACGAAAACGCTACCTCCGCCTTTGCTTCCCCAATCATCACTCACTTCCAGACAAAATCTTCCTCCATAGTCCCTCCATAGCTTTTCTCTTTCACTGCCCACACAACGCAAAGAGCTTCCACTCCGACGGCAAACCACTCGCTGACCATATCTCAGCTGCAGACAGGTTTCCTTCTCCGGCTTTTGATTCTTCTTTGTTGATGGAGCCATCTCATGAAGTTTCAGAAACGCCGGAGCAGATTATACTACGCTGGGACTCCGCCGCGCCGGAGGAAGTTAAGGATAAGATGATTTTCGACTCTGACAGGGAAGAGATCGACCGATACTTGCAGGCCGTCGACGAAATCCAGAGGTCGTTGTCGTCGGCTTCCATATCGGACGATCACAACAAAGTCGATTCCACTATGCAGATCGCCATGGCCAGGCTTGAGGATGAGTTCCGTCACATTTTGTCCAGTCACACCACTCCGATCGAGGTCGACTCGCTTACTGATCCGAGTCCCTCTTCCCGGTCCATGTCGACTAGTGCGAGTGGTGTATTCGAGGATGACAACGACGAGGAAGCGGATTTACCGGAAGTTCAGCTTGATTTAAGTGGCAGTCCGAGTTTTGGGTCGAGTGGACGATCGAGCTATCGGGCGACGAGCAGTATTCGTGAAATTGATCTGATACCTTCGGATGCGATCATCGATCTGCGAAGTATTGCTGAGCGGATGATATCGGCGGGGTACCTGCGCGAGTGCATCCAAGTCTATGGCAGTGTGCGAAAGTCCACCTTCGACTCCAGCTTCCGACGGCTCGGAATTGAGAAGTTGAGCATTGGAGATATCCAGAGGCTGGATTGGAACGAGCTGGAGACGAAGATCAGAAGGTGGATTAGAGCAGCAAAGGTTTCTATTAGGACTTTGTTTTCCAGCGAGAAGAAGCTCTGCGAGCAAATCTTTTATGGCATAGGGACCGCCATAGACGATGCTTGTTTCATGGAGACTGTAAAAGGCCCTGTGACTCAGTTGTTCAATTTCGCCGAAGCGATCAGTATAAGCCGCAGATCGCCGGAGAAGCTGTTCAAGATTCTAGACCTACACGATGCCTTAACGGATTTGATACCCGACATTGATGTGATATTCGAATCAAAATCCGCGGAATATATTCGGATTCAGGCGGCGGAGATATTGTCGCGGCTGGCGGAGGCCGTCAGAGGGACTTTATCGGAGTTTGAAAACGCTGTGCTGCGGGAGCCGTCGCTGCATCCGGTGCCTGGCGGGACGCTTCATCCGTTGACAAGGTATGTTATGAACTATGTGAGTCTGATTTCCGATTACAAAGTGACCTTAGACGAGCTCATCGTGTCCAAACCATCGACGGGCTCGAGGTACTCCGCCGACCCCACAACTCCAGATATGGACTTCGCCGAGCTAGAGGGCAAAACGCCATTAGCGCTCCATCTGATATGGAGCATCGTGATTCTGCAGTTCAATTTGGAGGGTAAGTCCAGGCACTACAGAGACCCTTCTCTAGCTCATCTCTTCATCATGAACAACGTTCATTACATCGTTCAGAAGATAAAAGGATCCCCAGAATTGCGAGAAATGATCGGAGACGTTTATCTGAAAAGGCTGACTGGGAAGTATCGACAGGCGGCGACAAACTACGAGAGAACAACGTGGGTGAATGTGTTGTATTGCCTGCGAAATGAAGGGTTGAATGTGGGCGGGAGCTTCTCTTCCGGCCCCTCAAAGAGCGCTATTAGAGAGAGATTCAAGACTTTCAACGCTATGTTTGAGGAGGTACACAGGACACAATCGGCATGGTTGATACCAGATTCTCAGCTGAGGGAGGAGCTTCGCATATCCATAACTGAGAAGTTGATCCCAGCTTACAGGTCGTTTCTTGGCCTACATGGCCACCACATAGAGAGTGGAAGGCACCCAGAAAATTACATTAAGTACTCGGTCGAGGAACTGGAAAATGCCATCTTGGATTTCTTTGAGGGTTGCTCAGTGACCCATAACATGAGAAGGAGATCTCACTGA 2058 49.95 MSIWKYSHKRKRYLRLCFPNHHSLPDKIFLHSPSIAFLFHCPHNAKSFHSDGKPLADHISAADRFPSPAFDSSLLMEPSHEVSETPEQIILRWDSAAPEEVKDKMIFDSDREEIDRYLQAVDEIQRSLSSASISDDHNKVDSTMQIAMARLEDEFRHILSSHTTPIEVDSLTDPSPSSRSMSTSASGVFEDDNDEEADLPEVQLDLSGSPSFGSSGRSSYRATSSIREIDLIPSDAIIDLRSIAERMISAGYLRECIQVYGSVRKSTFDSSFRRLGIEKLSIGDIQRLDWNELETKIRRWIRAAKVSIRTLFSSEKKLCEQIFYGIGTAIDDACFMETVKGPVTQLFNFAEAISISRRSPEKLFKILDLHDALTDLIPDIDVIFESKSAEYIRIQAAEILSRLAEAVRGTLSEFENAVLREPSLHPVPGGTLHPLTRYVMNYVSLISDYKVTLDELIVSKPSTGSRYSADPTTPDMDFAELEGKTPLALHLIWSIVILQFNLEGKSRHYRDPSLAHLFIMNNVHYIVQKIKGSPELREMIGDVYLKRLTGKYRQAATNYERTTWVNVLYCLRNEGLNVGGSFSSGPSKSAIRERFKTFNAMFEEVHRTQSAWLIPDSQLREELRISITEKLIPAYRSFLGLHGHHIESGRHPENYIKYSVEELENAILDFFEGCSVTHNMRRRSH 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 674209 676266 - Maker00023736 Lcy13g0060 650365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0060 685 PANTHER EXOCYST COMPLEX PROTEIN EXO70 84 673 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Lcy13g0060 685 Pfam Exo70 exocyst complex subunit C-terminal 299 669 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lcy13g0060 685 SUPERFAMILY Cullin repeat-like 82 672 IPR016159 -
Lcy13g0060 685 MobiDBLite consensus disorder prediction 166 194 - -
Lcy13g0060 685 MobiDBLite consensus disorder prediction 166 188 - -
Lcy13g0060 685 Gene3D Exocyst complex component Exo70 89 194 - -
Lcy13g0060 685 Gene3D Exocyst complex component Exo70 209 681 - -
Lcy13g0060 685 Pfam Exocyst complex component Exo70 N-terminal 87 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1075 Lcy-Chr11:32426632 Lcy13g0060 Lcy-Chr13:674209 1.33E-102 dispersed
Lcy13g0060 Lcy-Chr13:674209 Lcy5g2120 Lcy-Chr5:44244463 2.34E-133 dispersed
Lcy13g0060 Lcy-Chr13:674209 Lcy2g0063 Lcy-Chr2:462483 2.50E-147 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0060 K07195 - csv:101204229 1125.54