Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0075 ATGATGCTTCACTCCGTTGGAGCTGCTAGACAAACTTGTAGTTTACTTGCTGTTACCTGCGGAAGTGTACCTAAAGTAAAATACGAGGAGGATGTTGCTGTGGATAAGTTGAAATATCCCTTTCCAGAATTAGTTTCTTCCGGACGATTGGAGGTTCGAGTTTTGACAAATCCAAGCAAGGATGAATTTAGTAGAATTGTAGAATCATGTCAACCGAGCTTTGTCTACTTGCAAGGGGAACAACTTGAAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGCGGACTATTCAATACTGCATTACCATCCACCGTGTATTTAGAAATCCCAGATGGAGGCGAAATAGCAGATGCTCTTCATTCTAAGGGAATTCCCTATGTCATTTATTGGAACAACACATTTTCAAGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAGCAATTATGCCCTTCCCGGGAATGCTGACGATATTAGGAATGATCTAGAGCCTCAGCTTATTGGGGAACCTCTAAAGATTAACGTAGAACCTCCCGAGATAGATGCAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCTGTCTTAAGTATACATGATAATAATGTGACCGTGAGATTTCTTATCTGTGGAATGTCTGGCACACCGGATGCATGCTTATTGAGATCATTGGAGGATGGCCTTAATGCCCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCGCCACCTCTTCAAGCAGGATCCTTTTCTCGTGGTGTTGTGACAATGCGATGTGATATAGTGACCTGTAGTTCAGCCCACATCTCAATATTGGTGTCCGGTAGTGCTCATACTTGTTTTGATGATCAGTTGTTGGAGAAACATATCAAACATGAGATTATTGAAAATAGCCAATTAGTTCATGCCATGCATGATTGTGAGGGCAACAAACATCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCTTGCGGGGCAACTGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTTTTGAGGCAACTAGCACCTGATATATCGTATCGGAGTTTAGTTGCACTTGGCATTGGGGGAGTTCAGGGTTTGCCTGTTGCTTCTTTTGAGAAAGAGGATGCTGAGCGGTTGCTCTTCTTCTATTCAAGGGATGAGAATGATAAACATTCAGATCAGTTGCTTGTAAGTGTATTGCCCAACTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGGGGAACCAAGCCAGGGAATAAGGAACACTCTTTCACTTGACAGTCTTGCATATGCAAATATTCCTTCCATTAGAAAAGTAGGTGGAGAGGAGCCTGCACCAATGAATGGGTTTAAGACACCCTTACTCCCAGCTAGGAAAAGATTAAAAGTAGCTACCATGAGGCCTATTCCACGTGTGCATAGGAATAAAATGACACCATTCTCTGGATTGGCTGAAGCAGATGGGAATAATGGAGGCCAACCCAAGGCTAGTTTGCCCGTCATTACCCCGTCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGCAGATTGTTCCCTTAAATCCACTTCCTTTAAAGAAACATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCTGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTACTACTTAGAGGACATTCGCGACTTATTCCTCAAGGTGGACTTGAGGAGTTCCCAGATGCCATACTCAATGGGAAGCGTCTTGATCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGCGGTATTTGTGGTGAATGGGCCCATTTCGGGTGCGACCGGAGGCAGGGTCTCGGTGCATTTAAGGATTATGCCAAAACAGATGGGTTAGAGTATGTTTGTCCACACTGTAGCATTACAACTTACAAGAAGAAACCACACAGAGTAGCAAACGGGTCTCCGCAAGGAATAACGAATCCACGGATACCTTGA 2352 43.2 MMLHSVGAARQTCSLLAVTCGSVPKVKYEEDVAVDKLKYPFPELVSSGRLEVRVLTNPSKDEFSRIVESCQPSFVYLQGEQLENDEIGSLVWNGVDLSLEDLCGLFNTALPSTVYLEIPDGGEIADALHSKGIPYVIYWNNTFSSYAAAHFRNALLSVVQSSSTHTWDAFQLAHAAFRLHCVGSNYALPGNADDIRNDLEPQLIGEPLKINVEPPEIDAGEDEDGSLETLPVLSIHDNNVTVRFLICGMSGTPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENSQLVHAMHDCEGNKHHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDISYRSLVALGIGGVQGLPVASFEKEDAERLLFFYSRDENDKHSDQLLVSVLPNWFKPPTPSRKRGEPSQGIRNTLSLDSLAYANIPSIRKVGGEEPAPMNGFKTPLLPARKRLKVATMRPIPRVHRNKMTPFSGLAEADGNNGGQPKASLPVITPSKHVTVGSTSATQRKSFSSSSQSKQQIVPLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVANGSPQGITNPRIP 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 805090 812026 - Maker00023560 Lcy13g0075 650380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0075 783 Gene3D - 593 696 IPR036431 GO:0003677(InterPro)
Lcy13g0075 783 ProSiteProfiles ARID domain profile. 596 700 IPR001606 GO:0003677(InterPro)
Lcy13g0075 783 CDD ARID 598 696 - -
Lcy13g0075 783 SMART ARID_2 593 696 - -
Lcy13g0075 783 MobiDBLite consensus disorder prediction 554 575 - -
Lcy13g0075 783 CDD PHD_ARID4_like 706 757 - -
Lcy13g0075 783 SUPERFAMILY ARID-like 596 711 IPR036431 GO:0003677(InterPro)
Lcy13g0075 783 Pfam ARID/BRIGHT DNA binding domain 599 696 IPR001606 GO:0003677(InterPro)
Lcy13g0075 783 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 778 IPR042293 -
Lcy13g0075 783 SUPERFAMILY FYVE/PHD zinc finger 692 760 IPR011011 -
Lcy13g0075 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 766 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0075 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0075 Lcy-Chr13:805090 Lcy3g2277 Lcy-Chr3:49598967 8.05E-174 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g0460 . 174 540 ARID Transcription Factor Family AT1G04880 57.0 5.0e-107 385.6
Lcy9g2358 . 384 628 ARID Transcription Factor Family AT1G20910 50.2 1.2e-64 244.6
Lcy9g2296 . 16 309 ARID Transcription Factor Family AT1G76110 67.4 2.0e-111 399.8
Lcy13g0075 . 2 772 ARID Transcription Factor Family AT3G43240 59.5 3.7e-264 908.3
Lcy3g2277 . 5 396 ARID Transcription Factor Family AT3G43240 53.5 3.2e-114 410.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19330 None None None None Lcy TR