Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0075 ATGATGCTTCACTCCGTTGGAGCTGCTAGACAAACTTGTAGTTTACTTGCTGTTACCTGCGGAAGTGTACCTAAAGTAAAATACGAGGAGGATGTTGCTGTGGATAAGTTGAAATATCCCTTTCCAGAATTAGTTTCTTCCGGACGATTGGAGGTTCGAGTTTTGACAAATCCAAGCAAGGATGAATTTAGTAGAATTGTAGAATCATGTCAACCGAGCTTTGTCTACTTGCAAGGGGAACAACTTGAAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGCGGACTATTCAATACTGCATTACCATCCACCGTGTATTTAGAAATCCCAGATGGAGGCGAAATAGCAGATGCTCTTCATTCTAAGGGAATTCCCTATGTCATTTATTGGAACAACACATTTTCAAGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAGCAATTATGCCCTTCCCGGGAATGCTGACGATATTAGGAATGATCTAGAGCCTCAGCTTATTGGGGAACCTCTAAAGATTAACGTAGAACCTCCCGAGATAGATGCAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCTGTCTTAAGTATACATGATAATAATGTGACCGTGAGATTTCTTATCTGTGGAATGTCTGGCACACCGGATGCATGCTTATTGAGATCATTGGAGGATGGCCTTAATGCCCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCGCCACCTCTTCAAGCAGGATCCTTTTCTCGTGGTGTTGTGACAATGCGATGTGATATAGTGACCTGTAGTTCAGCCCACATCTCAATATTGGTGTCCGGTAGTGCTCATACTTGTTTTGATGATCAGTTGTTGGAGAAACATATCAAACATGAGATTATTGAAAATAGCCAATTAGTTCATGCCATGCATGATTGTGAGGGCAACAAACATCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCTTGCGGGGCAACTGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTTTTGAGGCAACTAGCACCTGATATATCGTATCGGAGTTTAGTTGCACTTGGCATTGGGGGAGTTCAGGGTTTGCCTGTTGCTTCTTTTGAGAAAGAGGATGCTGAGCGGTTGCTCTTCTTCTATTCAAGGGATGAGAATGATAAACATTCAGATCAGTTGCTTGTAAGTGTATTGCCCAACTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGGGGAACCAAGCCAGGGAATAAGGAACACTCTTTCACTTGACAGTCTTGCATATGCAAATATTCCTTCCATTAGAAAAGTAGGTGGAGAGGAGCCTGCACCAATGAATGGGTTTAAGACACCCTTACTCCCAGCTAGGAAAAGATTAAAAGTAGCTACCATGAGGCCTATTCCACGTGTGCATAGGAATAAAATGACACCATTCTCTGGATTGGCTGAAGCAGATGGGAATAATGGAGGCCAACCCAAGGCTAGTTTGCCCGTCATTACCCCGTCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGCAGATTGTTCCCTTAAATCCACTTCCTTTAAAGAAACATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCTGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTACTACTTAGAGGACATTCGCGACTTATTCCTCAAGGTGGACTTGAGGAGTTCCCAGATGCCATACTCAATGGGAAGCGTCTTGATCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGCGGTATTTGTGGTGAATGGGCCCATTTCGGGTGCGACCGGAGGCAGGGTCTCGGTGCATTTAAGGATTATGCCAAAACAGATGGGTTAGAGTATGTTTGTCCACACTGTAGCATTACAACTTACAAGAAGAAACCACACAGAGTAGCAAACGGGTCTCCGCAAGGAATAACGAATCCACGGATACCTTGA 2352 43.2 MMLHSVGAARQTCSLLAVTCGSVPKVKYEEDVAVDKLKYPFPELVSSGRLEVRVLTNPSKDEFSRIVESCQPSFVYLQGEQLENDEIGSLVWNGVDLSLEDLCGLFNTALPSTVYLEIPDGGEIADALHSKGIPYVIYWNNTFSSYAAAHFRNALLSVVQSSSTHTWDAFQLAHAAFRLHCVGSNYALPGNADDIRNDLEPQLIGEPLKINVEPPEIDAGEDEDGSLETLPVLSIHDNNVTVRFLICGMSGTPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENSQLVHAMHDCEGNKHHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDISYRSLVALGIGGVQGLPVASFEKEDAERLLFFYSRDENDKHSDQLLVSVLPNWFKPPTPSRKRGEPSQGIRNTLSLDSLAYANIPSIRKVGGEEPAPMNGFKTPLLPARKRLKVATMRPIPRVHRNKMTPFSGLAEADGNNGGQPKASLPVITPSKHVTVGSTSATQRKSFSSSSQSKQQIVPLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVANGSPQGITNPRIP 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 805090 812026 - Maker00023560 Lcy13g0075 650380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0075 783 Gene3D - 593 696 IPR036431 GO:0003677(InterPro)
Lcy13g0075 783 ProSiteProfiles ARID domain profile. 596 700 IPR001606 GO:0003677(InterPro)
Lcy13g0075 783 CDD ARID 598 696 - -
Lcy13g0075 783 SMART ARID_2 593 696 - -
Lcy13g0075 783 MobiDBLite consensus disorder prediction 554 575 - -
Lcy13g0075 783 CDD PHD_ARID4_like 706 757 - -
Lcy13g0075 783 SUPERFAMILY ARID-like 596 711 IPR036431 GO:0003677(InterPro)
Lcy13g0075 783 Pfam ARID/BRIGHT DNA binding domain 599 696 IPR001606 GO:0003677(InterPro)
Lcy13g0075 783 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 778 IPR042293 -
Lcy13g0075 783 SUPERFAMILY FYVE/PHD zinc finger 692 760 IPR011011 -
Lcy13g0075 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 766 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0075 Lcy-Chr13:805090 Lcy3g2277 Lcy-Chr3:49598967 8.05E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19330 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0075 - - - 0.0