Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0079 ATGGATTCCGTCAAGTCCTTCAAGGGCTACGGCAAGGTCGACGAGCTCGAGCAGCAAGCTTTCCGCCGGAAGACTCGCCGTCGATTTATCATACTTATTCTCTCTATCGTTCTTCTGATTGCTGTTGTCATCGGCGCCGTCGTCGGAGTCGTGATTCATAAACGGAACTCTTCGTCTTCTTCCGCCACGAGCTCGGCTCCTCCGACGGAGCTCACTCCGGCGGCTTCACTCAAAACTCTCTGCAGTGTGACTCAGTATCCGACTTCGTGCCAGTCCTCTCTCGGAAACTCCAACACCACCGATCCGGTGTTCCTCTTCAAGCTTTCTCTCCGAGTCGCCAGCGATTCGCTCTCTAAACTCGCCGATTACTCCTCCAAACTCAATTCCAGTGTCACCGATCCCAAACTCAGAGACGCAATCGGAATCTGCCGGAGTGTATTTGAAGACGCGATTGAGACGCTGAACGACACCGTTTCGTCCATGGAAGTAGATCGAAATGGTGAGAAGTTCTTGTCGCCGTCGCGGATTGAAGATCTGAAGACCTGGCTGACCACCACCATCACCGACCAAGAAACCTGCCTCGACGCCGTTCGAGATCTGGAAAACCAGACGGCGGTTCTCCAAGAATTGCAGACGGCAATGGCGAACTCGACCGAGTTCACTAGTAACAGTTTGGCGATTGTAACGAAAATCATAGGGCTGTTGGCGGATTTCAACATCCCAATCCATCGAAAGCTGATGGGGTTCCCGGAGTGGGTGAGCTCCGGCGACCGGCGGCTTCTGCAGGAGAACAATGTGACGGCGCATGTGACGGTGTCGAAGGATGGGAAAGGGGACTTCACGACGATCAATGACGCCGTTGCGGCGGTGCCAAAGAAAAGCAAAGAAAGATTCATCATATATGTGAAAGAAGGAATCTACGAAGAGAATGTGATTCTGGATAAGAGCAAGTGGAATGTTATGATGTACGGAGATGGCAGAACCAGAACCATTGTTTCCGGCAGCCTGAACTTCATCGACGGCACTCCCACCTTCTCCACCGCCACTTTTGCTGTGGCTGGCAGAGGCTTTATCGCCAAGGACATCGGCTTCGTCAACACGGCCGGCCCTCAAAAGCACCAGGCCGTCGCCTTCCGCTCTGGCTCCGACCTCTCCGTCATGTACGGATGCTCATTCGACGGCTATCAAGACACCCTCTACGCCCATTCCAACCGCCAATTCTACCGGGACTGCGACATCACCGGCACCATCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAGAACTGCAACATCCGCCCGAGGCAGCCACTTTCCAACCAATTCAACACCATCACAGCCCAAGGCAAAAAGGACATCAACCAAAACTCCGGCATTTCCATTCAGAAATGCACTTTCTCGCCCTACAACCAGAGTCTCACCGCCCCAACTTACTTGGGGCGGCCATGGAAGGAGTTTTCGACCACCGTGATTATGCAGTCGGAGATCGGAGATTTCCTGCAGCCGGTCGGGTGGAAGGAATGGGTCAGCGGGCAGGACCCACCGAGCACTATATTTTACGGGGAGTATCGGAATAGTGGGCCGGGATCCAACGTGGACAAGAGGGTTAAATGGACGGGTTACAAGCCCAGTCTTACCGACGCCGAGGCCGGAAAGTTCACCGTCGGGACCTTCCTCAACGGCGAGGATTGGTTGCCGGCCACCAGTGTAAAATTTGATACGTCCTTGTGA 1734 54.15 MDSVKSFKGYGKVDELEQQAFRRKTRRRFIILILSIVLLIAVVIGAVVGVVIHKRNSSSSSATSSAPPTELTPAASLKTLCSVTQYPTSCQSSLGNSNTTDPVFLFKLSLRVASDSLSKLADYSSKLNSSVTDPKLRDAIGICRSVFEDAIETLNDTVSSMEVDRNGEKFLSPSRIEDLKTWLTTTITDQETCLDAVRDLENQTAVLQELQTAMANSTEFTSNSLAIVTKIIGLLADFNIPIHRKLMGFPEWVSSGDRRLLQENNVTAHVTVSKDGKGDFTTINDAVAAVPKKSKERFIIYVKEGIYEENVILDKSKWNVMMYGDGRTRTIVSGSLNFIDGTPTFSTATFAVAGRGFIAKDIGFVNTAGPQKHQAVAFRSGSDLSVMYGCSFDGYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNIRPRQPLSNQFNTITAQGKKDINQNSGISIQKCTFSPYNQSLTAPTYLGRPWKEFSTTVIMQSEIGDFLQPVGWKEWVSGQDPPSTIFYGEYRNSGPGSNVDKRVKWTGYKPSLTDAEAGKFTVGTFLNGEDWLPATSVKFDTSL 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 833308 836866 - Maker00023636 Lcy13g0079 650384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0079 577 Pfam Plant invertase/pectin methylesterase inhibitor 76 227 IPR006501 GO:0004857(InterPro)
Lcy13g0079 577 SUPERFAMILY Pectin lyase-like 267 573 IPR011050 -
Lcy13g0079 577 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 232 IPR035513 -
Lcy13g0079 577 SMART PMEI_2 72 227 IPR006501 GO:0004857(InterPro)
Lcy13g0079 577 FunFam Pectinesterase 73 232 - -
Lcy13g0079 577 CDD PMEI-like_3 79 231 - -
Lcy13g0079 577 NCBIfam pectinesterase inhibitor domain 57 230 IPR006501 GO:0004857(InterPro)
Lcy13g0079 577 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Lcy13g0079 577 Gene3D - 263 577 IPR012334 -
Lcy13g0079 577 PANTHER PECTINESTERASE 29 568 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy13g0079 577 Pfam Pectinesterase 269 562 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy13g0079 577 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 231 IPR035513 -
Lcy13g0079 577 FunFam Pectinesterase 263 577 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0079 Lcy-Chr13:833308 Lcy1g0429 Lcy-Chr1:3790912 2.64E-138 dispersed
Lcy13g0079 Lcy-Chr13:833308 Lcy13g0080 Lcy-Chr13:839035 1.19E-123 tandem
Lcy5g1659 Lcy-Chr5:38789283 Lcy13g0079 Lcy-Chr13:833308 6.16E-160 transposed
Lcy13g0079 Lcy-Chr13:833308 Lcy3g2282 Lcy-Chr3:49654900 1.12E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0079 - - - 0.0