Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0080 ATGGCACAGCCCGACGATTCCGCCGCCGTCGGAGTTCCCTTCTCCGGCAGCCCCAAAAAGAAGAGCCTCTTCATCCTAGCCCTCCTCCTCGTCATCGGCACTGTCGCCGGCGTCTCCTCCTCGGACGAAGACCACGTGACCGTCGTTAGAAGCACGTGCGCCGTGACGCTCTACCCGGAGCTGTGCCAGTCGACGATATCCGCCGCCGTGGGAGGTGCTTCGAAGAAGGTGTCGAGTTCGAAAGACGTAATCGAAGCGTCGGTGAACATTACGATTGGTGCAGTGAAGCGGAACTACAAAAGCATCAAGAAATTGCTTGCGACGACGAAGAATCTGAGCAAGCGAGAGAAAATTGCTCTCGAGGATTGTCTGGAAAACGGCGAGGAGACGCTGAGAGAGCTGTATGAAGTGGTTGAAGATCTTAATGAGTATCCTAAGAAGAAGGCTCTGTCGCAGTACGCCGATGACCTCAAAACCTTGCTCAGTTCCGCCATCACTAATCAGGAGACATGTCTGGACGGATTCTCGCACGACAAAGCCGACAAGATCGTGCGAAAGTCATTAGAAGCAGGCCAAATCCACGTCGAGAAACTCTGCAGCATTGCTTTAGCATTGATCAAGAATCTCACCGACACCGACATTGCCAATCGGAGCAACAACCTATTGGCCCACGACAACCTCGCCAGAAAGCAGCTGACGGAGGACGACGGAGTTCAGTGGCCGGATTGGCTGTCCGCCGGTGACCGGAGGCTTATGCAGGCGTCGGCGGCGGCGACGCCGGACGCTGTGGTGGCCGCCGACGGGAGCGGAGATTTCACGACGGTGTCGGCGGCGGTTGCGGCGGCGCCGAATAGGAGTAGCCGGAGATATATAATAAGAATTAAGGCGGGGGTTTATAGAGAGAATGTGAATGTGCCGAGTAGCAAGAGGAATATAATGTTTTGGGGAGATGGAAGAACCACTACTATTATCACCGGAAACAGAAATGTCGTCGACGGCAGCACCACCTTCAACTCCGCCACCGTTGCGGCGGTGGGAGAAAGATTCTTAGCGAGGGACATCACCTTCCAGAACACCGCCGGTCCATCAAAGCACCAAGCGGTGGCGCTCCGCGTCGGCTCCGATTTCTCCGCCTTTTACCGCTGCGACATGCTCGCCTATCAAGACACTCTCTACGTTCACTCCAACCGCCAATTCTACGTCAGCTGCATCATCATCGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGCCGTCATCCAAGACTGCGACATCCACGCCCGCCGCCCCAATCCCGGCCAGAGAAACATGGTCACTGCACAGGGAAGAACCGACCCAAATCAGAACACCGGAATCGTGATCCAGAAGTGCAGAATCGGAACCACCTCCGATCTGCAGCCGGTGATCAGAAATTTCCCGACGTTTCTCGGCCGGCCGTGGCAGAGATATTCCAGAACGGTGGTTATGCAGACGAGTATTAGCAACGTGATTGATCCGGCGGGTTGGCACGTTTGGAATGGGAATTTTGCGCTCGATACTCTGTTTTATGCCGAGTATCAGAACAGTGGGCCTGGCGCCGATACGTCGAGGAGAGTGACGTGGAAGGGGTACAGGGTCCTTACCAGTGCGGCGGAAGCGCAGGAATTCACGGCCGGAAATTTCATCGGCGGCGGCAGCTGGCTGAGCTCCACCGGATTCCCGTTTTCACTTGGGCTGTAA 1719 56.02 MAQPDDSAAVGVPFSGSPKKKSLFILALLLVIGTVAGVSSSDEDHVTVVRSTCAVTLYPELCQSTISAAVGGASKKVSSSKDVIEASVNITIGAVKRNYKSIKKLLATTKNLSKREKIALEDCLENGEETLRELYEVVEDLNEYPKKKALSQYADDLKTLLSSAITNQETCLDGFSHDKADKIVRKSLEAGQIHVEKLCSIALALIKNLTDTDIANRSNNLLAHDNLARKQLTEDDGVQWPDWLSAGDRRLMQASAAATPDAVVAADGSGDFTTVSAAVAAAPNRSSRRYIIRIKAGVYRENVNVPSSKRNIMFWGDGRTTTIITGNRNVVDGSTTFNSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYRCDMLAYQDTLYVHSNRQFYVSCIIIGTVDFIFGNAAAVIQDCDIHARRPNPGQRNMVTAQGRTDPNQNTGIVIQKCRIGTTSDLQPVIRNFPTFLGRPWQRYSRTVVMQTSISNVIDPAGWHVWNGNFALDTLFYAEYQNSGPGADTSRRVTWKGYRVLTSAAEAQEFTAGNFIGGGSWLSSTGFPFSLGL 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 839035 844331 - Maker00023815 Lcy13g0080 650385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0080 572 PANTHER PECTINESTERASE 25 563 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy13g0080 572 FunFam Pectinesterase 255 572 - -
Lcy13g0080 572 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Lcy13g0080 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 211 IPR035513 -
Lcy13g0080 572 Gene3D - 255 572 IPR012334 -
Lcy13g0080 572 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Lcy13g0080 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 210 IPR035513 -
Lcy13g0080 572 Pfam Pectinesterase 261 557 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy13g0080 572 FunFam Pectinesterase 45 210 - -
Lcy13g0080 572 SMART PMEI_2 44 205 IPR006501 GO:0004857(InterPro)
Lcy13g0080 572 CDD PMEI-like_3 51 210 - -
Lcy13g0080 572 Pfam Plant invertase/pectin methylesterase inhibitor 48 205 IPR006501 GO:0004857(InterPro)
Lcy13g0080 572 SUPERFAMILY Pectin lyase-like 255 571 IPR011050 -
Lcy13g0080 572 NCBIfam pectinesterase inhibitor domain 22 210 IPR006501 GO:0004857(InterPro)
Lcy13g0080 572 Coils Coil 124 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0080 Lcy-Chr13:839035 Lcy3g2282 Lcy-Chr3:49654900 1.66E-275 dispersed
Lcy13g0079 Lcy-Chr13:833308 Lcy13g0080 Lcy-Chr13:839035 1.19E-123 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0080 K01051 - csv:101207996 903.664