Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0086 ATGAAAGCAAGCACAAGTTCTGACACTGCTGTTCTGCTGCCTCTTAAGTCCCACCATTCGTCCGGAGTTCTGCTCCTTTGTTGGGCTTTGCATTTGTCTTTCACTCCTTCAGATATTCCAATTAACTTTCTACAGCTTGGTGCTGGCTGTATTTGGCAGAGGAGAGAGCAAGTGACTGAGAGAGAAATGGTGAAGAAATGGAGTTGGGGAGAGGCGTTGCTGCTAATCAATATCTGCATTTTGGGATGGAGGGCCAGTTTTATCAATGGAGCTACGGATCCAGGAGATGGTCAGTACCTGACTTTTTTCTGTCTTGTTTCACTCTGCTTGTTTTCCTTCTCATTCGAAGTTTCTGCTCTCACATTAGCTTTCAGGCATTCCTTTTCTTCTTCGTCTCTCCTCGGTTCCTCAATGTCCTGCACTGAATATACTGGAAAGCAACCTGGATATTCCTTACAATACATATTGTCTGCTCTAAATGCTATGTATACTAGTTTAAACTCGCCTCCAATTCTAACACTATGGAGTGCAAGTGGTGGAGATCCATGTGGGCAGCTTTGGAAAGGCATTACTTGCTCAGGCTCACGGGTTACAGAAATTTCATTGTCTGGTTTAGGACTTTCAGGATCACTGGGATACCAGCTCTCAAGTTTAACATCTCTAATGAACCTAGACGTGAGTATCAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACATGCAAAAACTAAACCTCGGATGGAATAACTTCAGTGGAAGCATTCCCTATTCTATTTCCCAAATGAGTTTGCTTATTTCCTTGAATATCAGCCACAATCAGCTTCGGAATCAAGTGAACGATATGTTCTGGAAGCTTTCATCCCTGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGTCCTCCCCCAGAGTTTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAACTCTTCCACTACAAAACTTGAATGTTGAGAACAACCATTTTACTGGATGGGTTCCTGAACGATTGAAGAACATAAACATTCAGGAGGGTGGAAATTCTTGGAGCTTTGGGCTTGCACCCCCACCTCCACCCGGTACACCTCCAGCCAACCAAAATTACAGGTATCACAAGCCTGGGAACAATTACAGCCCACTGAGCAGTGGTGCTGCTGGTGGAGACAGCAGTAGATCAGGAATCAGTGGTGGCGCCATTGCTGGAATCCTTATATCTGTGCTAGTAGTGGGAGCAGCACTAGCATATCTCTTTGTAAAGAGAAGACCGAAGAAGTCATCCACAGACATAGAAAAGCAAAAGCTTGGGAACCAGCCTAGCGTATCCCCTGCTTCAAATGTTGTGCAAGATTCATTGGCAGAGATGAAGCTTATCCATACTTCATCTTCATTTGATGCAAAAGCATTGGATTCTCCCGCTTCAATCAATCTAAAACCCCCACCCATCGATCGTCATAAATCATTTGATGACAATGATACATTGACGATACCTGTTGTGAAGAAGACCAATGTCACTCCTCCAATAAGTGTGAAGTCATATTCAATAGCAGAGCTGCAAATGGCTACAGGCAGTTTCAATGGAGAAAACCTTCTTGGCGAGGGATCACTTGGACGGGTTTATCGGGCTCAGTTCGACGATGGGAAGGTTCTTGCTGTGAAGAAAATAGATTCAGCTGCCCTCCCTAGAGAATTGTTGGAAGATTTCACAGAGATCGTTGCTAATGCTTCTCAGTTGCACCATCCTAATGTAACCGAGCTAATGGGCTATTGCTCAGAGCATGGTCTGCATTTGCTACTATATGAGTTCCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCATTGACTTGGAACTCACGTGTCAAGATTGCTTTGGGGACGGCCCGTGCATTAGAGTATCTACATGAAGTTTGTGCACCATCAGTTGTTCACAGAAATATCAAGTCAGCCAATATCTTACTGGATGCTGAACTTAATCCTCATCTCTCCGATTGTGGCCTGGCTAGCTTTATAACTAATCTAGATCAGGCATTAGATCAGCAGGCAGGATCTGGATACAGTGCCCCTGAGGTTACTATGTCGGGTCAATATACATTACAAAGTGACGTATATAGCTTTGGAGTGGTGATGTTGGAACTTCTAAGTGGGCGTACACCGTTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACACCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATCCTGCACTAAAAGGTCTTTACCCAGTTAAGTCTCTCTCAAGATTTGCAGACGTTGTGGCTCTCTGCGTCCAGCCAGAGCCCGAATTTAGACCTCCCATGTCAGAGGTGGTGGAAGCGTTGGTGCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCACGGATCATCTTTTAGAACTGATGAACCTGATGCACAAGAGACATCTTAA 2544 44.26 MKASTSSDTAVLLPLKSHHSSGVLLLCWALHLSFTPSDIPINFLQLGAGCIWQRREQVTEREMVKKWSWGEALLLINICILGWRASFINGATDPGDGQYLTFFCLVSLCLFSFSFEVSALTLAFRHSFSSSSLLGSSMSCTEYTGKQPGYSLQYILSALNAMYTSLNSPPILTLWSASGGDPCGQLWKGITCSGSRVTEISLSGLGLSGSLGYQLSSLTSLMNLDVSINNLGPDIPYQLPQNMQKLNLGWNNFSGSIPYSISQMSLLISLNISHNQLRNQVNDMFWKLSSLSMLDVSFNFLSGVLPQSFSNLTSMNSMFLQNNQFSGTIDVLATLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPANQNYRYHKPGNNYSPLSSGAAGGDSSRSGISGGAIAGILISVLVVGAALAYLFVKRRPKKSSTDIEKQKLGNQPSVSPASNVVQDSLAEMKLIHTSSSFDAKALDSPASINLKPPPIDRHKSFDDNDTLTIPVVKKTNVTPPISVKSYSIAELQMATGSFNGENLLGEGSLGRVYRAQFDDGKVLAVKKIDSAALPRELLEDFTEIVANASQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILLDAELNPHLSDCGLASFITNLDQALDQQAGSGYSAPEVTMSGQYTLQSDVYSFGVVMLELLSGRTPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDEPDAQETS 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 874957 881122 - Maker00023951 Lcy13g0086 650391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0086 847 Gene3D Ribonuclease Inhibitor 156 371 IPR032675 -
Lcy13g0086 847 Gene3D Phosphorylase Kinase; domain 1 509 619 - -
Lcy13g0086 847 SUPERFAMILY L domain-like 159 357 - -
Lcy13g0086 847 MobiDBLite consensus disorder prediction 366 407 - -
Lcy13g0086 847 MobiDBLite consensus disorder prediction 825 847 - -
Lcy13g0086 847 Gene3D Transferase(Phosphotransferase) domain 1 621 837 - -
Lcy13g0086 847 Pfam Leucine Rich Repeat 242 264 IPR001611 GO:0005515(InterPro)
Lcy13g0086 847 Pfam Leucine Rich Repeat 290 312 IPR001611 GO:0005515(InterPro)
Lcy13g0086 847 MobiDBLite consensus disorder prediction 832 847 - -
Lcy13g0086 847 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 620 828 - -
Lcy13g0086 847 PANTHER LEUCINE RICH REPEAT KINASE 2 419 816 IPR051420 -
Lcy13g0086 847 SUPERFAMILY Protein kinase-like (PK-like) 522 814 IPR011009 -
Lcy13g0086 847 MobiDBLite consensus disorder prediction 386 407 - -
Lcy13g0086 847 ProSiteProfiles Protein kinase domain profile. 542 817 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0086 847 Pfam Protein tyrosine and serine/threonine kinase 546 814 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0086 847 CDD STKc_IRAK 548 817 - -
Lcy13g0086 847 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 507 619 - -
Lcy13g0086 847 Pfam Leucine rich repeat N-terminal domain 157 193 IPR013210 -
Lcy13g0086 847 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 154 378 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0819 Lcy-Chr10:25136829 Lcy13g0086 Lcy-Chr13:874957 2.85E-195 dispersed
Lcy13g0086 Lcy-Chr13:874957 Lcy5g1479 Lcy-Chr5:35449049 5.04E-169 dispersed
Lcy5g0314 Lcy-Chr5:2993754 Lcy13g0086 Lcy-Chr13:874957 2.67E-22 dispersed
Lcy13g0086 Lcy-Chr13:874957 Lcy3g2287 Lcy-Chr3:49700726 2.45E-235 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65541 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0086 - - - 0.0