Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0088 ATGGGGAAGACGCAAGAGGACGATATTTCGCAGAAGCTTCCTAGCTGCTGTGGAGTTGCTATATTGCCTTCCCTTCCTAATCGCCAACGAACTCCTCGATTTGGGGAGTTCTTGATCATTCTGCAGCTGGGATTCGACCTGGATATCCTCGTTGCGTCAGTTCAAATGGGTTCAACAGAGGAGAAAACAAATTACCTATCAGACGAAGAAATTCCATTGAAGCCATCACCAATTGCGAAAAACGTATTGCATAGTTTTGATTGTGAGACGGCTCATGTGCGTTCTTCCTCAGATGATAAAAGATGGTGGCAGGCTAACAACATTCGTATTAGACCTCTTGAAAGTGCTAAAATAGTGTTGGTTAAAGCAAAGATCAACGTGTTACTACCTTTTGGTCCTTTGGCAATCCTGCTACATTATTTAACTGGAAAGCATGTAAGAAGTACTTCTCTTCACGATCTTACTGTCAGCTTTATATGTCAGGGATGGGTCTTCTTTTTTACTTTACTTGGAATTACACCTCTGGCAGAACGTCTTGGTTATGCAACTGAGCAGCTTGCTTCCTATACTGGACCAACAGTTGGTGGTCTTTTGAATGCAACATTTGGAAATGCAACCGAAATGATTATTTCGATTTATGCTTTAAAGAGTGGGATGATCAGGGTTGTTCAACAGTCGTTGCTGGGGTCAATCTTGTCGAATATGCTCCTAGTGCTTGGTTGCGCTTTCTTCACTGGTGGGATTGTTCATCATAAGAAAGTGCAGACTTTCAATAAGGGTACTGCTGTTGTGAATTCAGGATTGTTGTTGATGGCTGTTATGGGAACAACTTTTCCGGCTGTGCTTCATTTCACCCACACAGAACTTCATTCTGGAGAGTCAGCATTGTCTCTTTCAAGATTTAGCAGTTGTATAATGTTAATTGCATATGCAAGCTACCTTTTCTTTCAACTAAAAAGTCAGCATAATCTCTATGGTTCTCTTGATGAGGAAGGTGATGATGAAGTTGAGGAGGATCCTGAGATTTATGCTTGGGAAGCAATTGGATGGCTTGCTATCTTGACTGTATGGGTATCGATTTTATCTGGATACCTTGTCGATGCTATCCAGGGAGCATCAGAATCATTAAATTTGCCAGTGGCTTTTATTAGTGTAATTTTGTTGCCAATTGTTGGAAATGCTGCCGAACATGCAAGTGCTATCATGTTTGCCATGAAAGACAAGCTTAACATCACCCTTGGAGTTGCTATTGGATCATCTACACAAATATCCATGTTTGTGATCCCGTTTTGCGTGGTCGTTGGATGGTGTATGGGAAAACCAATGGACTTGAACTTCAAACTCTTTGAGACAGCAACTCTGTTTATCACTGTGCTAGTGGTGGCCTTTATGTTGCAGATGATGATTAACCCTCAAAGCAAGTTGGTCCTGGAATTTTACTGCAAGCTGAACTTTTGCATTGCATTAGTTCTCAAACCACCATTGCTTCAGTTCGTGGAACCTGCAAACATTAGAGAACTCACACGAATGGTTTGGACTTCAGATGGAGTCTGGTTTCATTAG 1563 41.59 MGKTQEDDISQKLPSCCGVAILPSLPNRQRTPRFGEFLIILQLGFDLDILVASVQMGSTEEKTNYLSDEEIPLKPSPIAKNVLHSFDCETAHVRSSSDDKRWWQANNIRIRPLESAKIVLVKAKINVLLPFGPLAILLHYLTGKHVRSTSLHDLTVSFICQGWVFFFTLLGITPLAERLGYATEQLASYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHKKVQTFNKGTAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLIAYASYLFFQLKSQHNLYGSLDEEGDDEVEEDPEIYAWEAIGWLAILTVWVSILSGYLVDAIQGASESLNLPVAFISVILLPIVGNAAEHASAIMFAMKDKLNITLGVAIGSSTQISMFVIPFCVVVGWCMGKPMDLNFKLFETATLFITVLVVAFMLQMMINPQSKLVLEFYCKLNFCIALVLKPPLLQFVEPANIRELTRMVWTSDGVWFH 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 892775 898128 - Maker00023468 Lcy13g0088 650393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0088 520 NCBIfam calcium/proton exchanger 162 464 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Lcy13g0088 520 Gene3D - 335 491 IPR044880 -
Lcy13g0088 520 Gene3D - 192 331 IPR044880 -
Lcy13g0088 520 FunFam Vacuolar cation/proton exchanger 335 490 - -
Lcy13g0088 520 FunFam Vacuolar cation/proton exchanger 192 331 - -
Lcy13g0088 520 Pfam Sodium/calcium exchanger protein 163 318 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy13g0088 520 Pfam Sodium/calcium exchanger protein 347 469 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy13g0088 520 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 81 469 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0088 Lcy-Chr13:892775 Lcy8g1337 Lcy-Chr8:40122536 1.56E-166 dispersed
Lcy13g0088 Lcy-Chr13:892775 Lcy5g0112 Lcy-Chr5:1155959 1.24E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0088 K07300 - csv:101219432 709.909