Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0089 ATGAGACCGCTTCAGCCGCCGCAGGGTGTGAATCCGGCCAACGATCGTCCTCGTCGCCGGCCGAATCTAACCCTTCCGCTTCCGCAGCGGGACAACACGTCGTTGGCCGTGCCTCTCCCTTTGCCTCCGACGTCCTCGAACTCCGCTCCGCCTTCCACCAGTCAACTCCACAACGGAAACCGACCGGCGGAGGCTCATCCTCATTCGCATCCGCATCCTCAGGCGCAGCAGCATCAGGCGTTCAGCCTCTCCGACTTTGAGCGAGTCAGTCGAATCGGAAGTGGATGCGGAGGTACTGTGTACAAAGTGATTCACCGTCCCACCGGCCGAATCTATGCTCTCAAGGTCATTTACGGCAACCACGAGGACGCGGTTCGGCTTCAGATGTGCCGTGAGGTCGAGATCCTTCGCGACGTTGACAATCCCTATGTGGTCAAGTGCCACGATATGTTCGATCACAACGGCGAAATCCAGGTTCTTCTCGAGTACATGGATCGGGGCTCTTTGGAAGGAACGCACATCCCTCAAGAACATCATCTCTCCGATTTGGCTCGCCAGATTCTCAGCGGCCTCGCGTATCTCCATAGCCGCCGCATCGTCCATCGCGACATCAAACCCTCGAATCTCCTAATTAATTCCCGGAGGCAGGTTAAGATCGCCGATTTCGGCGTCGGCCGAATCTTGGAACAGACTATGGATCCTTGCAATTCCTCCGTTGGAACTATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGCTACGCAGGGGATATTTGGAGCTTTGGCGTTAGCATATTGGAATTTTATCTCGGACGGTTTCCTCTCGCTGTTGAGAGGCCTGGGGATTGGGCGAGCTTGATGTGTGCTATTTGTATGGCTCAGCCGCCGGAGGCGCCTCCCACGGCGTCGCCGGAGTTTCGCCATTTTATTGCCTGTTGTTTGCAGAGAGAAGCTCGGAAGAGATGGACTGCTGCTGCATTACTGGAACATGCGTTCATAACAAGGAAAAATGGAGCGATTCAGTACCAGAATCAGCAGCAGACTCAGACTCATCATCAGAATCTTCGTCAACTATTACCTCCTCCGCCCCTTCATCCTTCCAGCCTTTCTTGA 1137 54.53 MRPLQPPQGVNPANDRPRRRPNLTLPLPQRDNTSLAVPLPLPPTSSNSAPPSTSQLHNGNRPAEAHPHSHPHPQAQQHQAFSLSDFERVSRIGSGCGGTVYKVIHRPTGRIYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGAIQYQNQQQTQTHHQNLRQLLPPPPLHPSSLS 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 899414 900550 - Maker00023779 Lcy13g0089 650394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0089 378 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 62 351 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lcy13g0089 378 FunFam Dual specificity mitogen-activated protein kinase kinase 72 164 - -
Lcy13g0089 378 Pfam Protein kinase domain 86 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0089 378 SUPERFAMILY Protein kinase-like (PK-like) 64 363 IPR011009 -
Lcy13g0089 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0089 378 CDD PKc_MAPKK_plant_like 84 342 - -
Lcy13g0089 378 Gene3D Phosphorylase Kinase; domain 1 60 165 - -
Lcy13g0089 378 MobiDBLite consensus disorder prediction 1 78 - -
Lcy13g0089 378 FunFam Mitogen-activated protein kinase 2 166 354 - -
Lcy13g0089 378 SMART serkin_6 86 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0089 378 ProSiteProfiles Protein kinase domain profile. 86 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0089 378 MobiDBLite consensus disorder prediction 38 60 - -
Lcy13g0089 378 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524(InterPro)
Lcy13g0089 378 Gene3D Transferase(Phosphotransferase) domain 1 168 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0089 Lcy-Chr13:899414 Lcy5g2364 Lcy-Chr5:46474646 7.61E-102 dispersed
Lcy13g0089 Lcy-Chr13:899414 Lcy10g0180 Lcy-Chr10:2476269 6.65E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65542 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0089 K13413 - csv:101219669 609.757