Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0089 ATGAGACCGCTTCAGCCGCCGCAGGGTGTGAATCCGGCCAACGATCGTCCTCGTCGCCGGCCGAATCTAACCCTTCCGCTTCCGCAGCGGGACAACACGTCGTTGGCCGTGCCTCTCCCTTTGCCTCCGACGTCCTCGAACTCCGCTCCGCCTTCCACCAGTCAACTCCACAACGGAAACCGACCGGCGGAGGCTCATCCTCATTCGCATCCGCATCCTCAGGCGCAGCAGCATCAGGCGTTCAGCCTCTCCGACTTTGAGCGAGTCAGTCGAATCGGAAGTGGATGCGGAGGTACTGTGTACAAAGTGATTCACCGTCCCACCGGCCGAATCTATGCTCTCAAGGTCATTTACGGCAACCACGAGGACGCGGTTCGGCTTCAGATGTGCCGTGAGGTCGAGATCCTTCGCGACGTTGACAATCCCTATGTGGTCAAGTGCCACGATATGTTCGATCACAACGGCGAAATCCAGGTTCTTCTCGAGTACATGGATCGGGGCTCTTTGGAAGGAACGCACATCCCTCAAGAACATCATCTCTCCGATTTGGCTCGCCAGATTCTCAGCGGCCTCGCGTATCTCCATAGCCGCCGCATCGTCCATCGCGACATCAAACCCTCGAATCTCCTAATTAATTCCCGGAGGCAGGTTAAGATCGCCGATTTCGGCGTCGGCCGAATCTTGGAACAGACTATGGATCCTTGCAATTCCTCCGTTGGAACTATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGCTACGCAGGGGATATTTGGAGCTTTGGCGTTAGCATATTGGAATTTTATCTCGGACGGTTTCCTCTCGCTGTTGAGAGGCCTGGGGATTGGGCGAGCTTGATGTGTGCTATTTGTATGGCTCAGCCGCCGGAGGCGCCTCCCACGGCGTCGCCGGAGTTTCGCCATTTTATTGCCTGTTGTTTGCAGAGAGAAGCTCGGAAGAGATGGACTGCTGCTGCATTACTGGAACATGCGTTCATAACAAGGAAAAATGGAGCGATTCAGTACCAGAATCAGCAGCAGACTCAGACTCATCATCAGAATCTTCGTCAACTATTACCTCCTCCGCCCCTTCATCCTTCCAGCCTTTCTTGA 1137 54.53 MRPLQPPQGVNPANDRPRRRPNLTLPLPQRDNTSLAVPLPLPPTSSNSAPPSTSQLHNGNRPAEAHPHSHPHPQAQQHQAFSLSDFERVSRIGSGCGGTVYKVIHRPTGRIYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGAIQYQNQQQTQTHHQNLRQLLPPPPLHPSSLS 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 899414 900550 - Maker00023779 Lcy13g0089 650394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0089 378 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 62 351 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lcy13g0089 378 FunFam Dual specificity mitogen-activated protein kinase kinase 72 164 - -
Lcy13g0089 378 Pfam Protein kinase domain 86 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0089 378 SUPERFAMILY Protein kinase-like (PK-like) 64 363 IPR011009 -
Lcy13g0089 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0089 378 CDD PKc_MAPKK_plant_like 84 342 - -
Lcy13g0089 378 Gene3D Phosphorylase Kinase; domain 1 60 165 - -
Lcy13g0089 378 MobiDBLite consensus disorder prediction 1 78 - -
Lcy13g0089 378 FunFam Mitogen-activated protein kinase 2 166 354 - -
Lcy13g0089 378 SMART serkin_6 86 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0089 378 ProSiteProfiles Protein kinase domain profile. 86 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0089 378 MobiDBLite consensus disorder prediction 38 60 - -
Lcy13g0089 378 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524(InterPro)
Lcy13g0089 378 Gene3D Transferase(Phosphotransferase) domain 1 168 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0089 K13413 - - csv:101219669 609.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0089 Lcy-Chr13:899414 Lcy5g2364 Lcy-Chr5:46474646 7.61E-102 dispersed
Lcy13g0089 Lcy-Chr13:899414 Lcy10g0180 Lcy-Chr10:2476269 6.65E-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0940 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.2 6.7e-136 481.1
Lcy4g2246 . 42 339 MAP Kinase Kinase Gene Family AT4G26070 65.9 5.7e-111 398.3
Lcy4g2203 . 26 355 MAP Kinase Kinase Gene Family AT4G26070 55.6 1.5e-106 383.6
Lcy2g0940 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 1.6e-134 476.5
Lcy4g2246 . 16 339 MAP Kinase Kinase Gene Family AT4G29810 61.5 9.7e-111 397.5
Lcy4g2203 . 10 325 MAP Kinase Kinase Gene Family AT4G29810 59.5 2.8e-110 396.0
Lcy10g0180 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.9 1.2e-229 793.1
Lcy13g0089 . 1 376 MAP Kinase Kinase Gene Family AT1G51660 68.5 8.8e-126 447.6
Lcy5g2364 . 45 314 MAP Kinase Kinase Gene Family AT1G51660 55.9 1.9e-83 307.0
Lcy13g0089 . 1 376 MAP Kinase Kinase Gene Family AT3G21220 67.4 7.6e-127 451.1
Lcy5g2364 . 40 310 MAP Kinase Kinase Gene Family AT3G21220 55.4 7.2e-85 311.6
Lcy4g2203 . 1 359 MAP Kinase Kinase Gene Family AT5G56580 83.3 3.3e-170 595.1
Lcy2g0940 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 60.2 2.4e-120 429.5
Lcy4g2246 . 16 323 MAP Kinase Kinase Gene Family AT5G56580 56.5 1.9e-96 350.1
Lcy5g2364 . 1 308 MAP Kinase Kinase Gene Family AT1G18350 63.7 2.0e-107 386.3
Lcy13g0089 . 78 341 MAP Kinase Kinase Gene Family AT1G18350 52.8 8.3e-77 284.6
Lcy5g2364 . 1 296 MAP Kinase Kinase Gene Family AT3G06230 51.6 1.7e-79 293.5
Lcy5g2364 . 1 308 MAP Kinase Kinase Gene Family AT1G73500 66.7 1.0e-114 410.6
Lcy13g0089 . 82 341 MAP Kinase Kinase Gene Family AT1G73500 53.2 1.7e-77 287.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65542 None None None None Lcy PK