Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0097 ATGTCTGGCACCGTGGGTTTGGTCGTTATGCAGCTTGTTTCCCGCCATTTCCTGCTACTGGTATGCTTCTCTTTCCCCATTTATGTCGTTTCTGGTTTAAACTCTGATGGGTTGGCTTTATTGTCACTCCAAAGCCGCTGGACTACCCACACTCCTTTTGTCCCTCTTTGGAATGCCTCTGATTCCACTCCCTGTTCTTGGTTTGGGATTGCTTGTGATAACAACCTTCGTGTCATCACCATGAATCTCTCTTTTCATGGGATTTCGGGTCAGCTAGGACCCGAAATCTCGCGTTTGACACAGTTGCGTACCATTGATTTGCTCACGAACAATTTTTATGGTGCAATTCCTAATGGGATAAGTAACTGTAGCCATTTGGAGTACTTGGATCTCTCCTTTAACCAATTTGGTGGAGAAATTCCTCAGTCATTAATGCTTCTTAGGAACTTGACGTCTTTGAACTTCCATGGCAATGTTCTAACAGGTGTGATACCCAACTCGTTGTTTCAAATTGTGAGTTTGCAGTATGTGTATCTTAGCGAAAACAATCTCAATGGTTCTATTCCTTCAAATGTGGGGAATTTGAGGCAGGTCTTGCATTTGTATCTGTATGGAAATGAGTTGTCTGGAACCATACCTTCTTCCATAGGGAATTGTAGCCAATTGATGGAGCTTTATTTGGATCAGAACCAGTTGGTGGGAGTGTTGCCCAATAGTCTTAACAATCTTGATAATCTTGTGAATTTGGGTGTCAGCCGCAACAATCTTGAGGGTCCAATTCCCTTGGGTTCAGGGGGTTGCCAGAGTTTAGAATTTATAGATTTGTCATTCAATGGTTATACTGGAGGTATACCTGCCGGGATGGGCAACTGTAGTCACCTAAGAACCATACTCCTTGTGAATTCCAGTCTAACAGGACATATTCCTTCCACCTTTGGCCAGCTAAGTAATCTTATGGCTATTGATCTCTCTAGAAATCAACTGTCTGGGAGTATACCATCTGAACTCGGGGCTTGCAAATCCTTGAAAAAACTCGAGTTGTACGACAACCAACTCGAGGGGCATATTCCTAGTGAATTGGGTTTGCTAAGTGGATTAGAGACCCTTCGATTGTTTTCGAACCGTTTGACTGGTGAGATTCCTATCAACATCTGGAAGATTGCAAGTCTCCAGCATATTTCTGTGTACAACAACAACCTTTCAGGGGAACTGCCCTTGATAATAACTGAGCTCAAGCACCTCAAAAACATTTCTGTGTTCAACAACCATTTTTCTGGAGTCATACCTCAAAGTTTGGGACTCAACAGCAGCTTAGAGCAAGTGGAGTTCACTAATAACCAGTTCACTGGTCAAATTCCACCAAATCTATGCTCTGGAAAGACATTAAGGTTGTTAAATTTAGGTTTGAATCGATTTCAAGGTAGCGTACTTTCAGATATTGGAACCTGTGTGACTCTTCAGAGGTTGATTTTGAGAAAGAATAATCTAACAGGGGTTTTGCCAGAATTTATGAGAAATCACGGCCTTCGGTTCATGGATGCCAGTGAAAATAACCTGAATGGAACAATTCCATCAAGTTTGGGAAATTGCATCAATCTCACCTCAATTAATTTATCAAGAAACAAGATTACAGGTCTTATACCTAATGAGTTGGGAAATCTTGTGAATCTTCAAAGTTTGAGTTTGTCTCACAACTACTTGGAAGGACATTTGCCATCTTCCCTATCACATTTTACTAAACTGGATAAGTTTGACGTAGGATTCAATTTATTGAATGGTTCTGTACCTCATAGTTTGGCTAGCTGGAAAGTTATATCCACGTTGATATTAAAAGAGAATCGATTCACGGGAGGCATCCCGAATGTATTATCAGAACTTGAAAGCCTTTCACTACTAGATCTTGGTGGCAATTTGTTTGGAGGGGAAATCCCTTCATCTATTGGAGCTTTGAAGAATCTGTTTTATTCCTTGAATCTCAGTAACAATGGGTTAACTGGCCAACTACCTCCTGAGTTACGGAGTCTGGCCATGCTAGAGAAGTTAGATATATCTCACAATAATTTGAATGGAAGTTTAAGAGTTCTTGACGAACTCAGTTCATCGATAGTTGAGCTTAACATTTCAGATAATTTCTTCACAGGTCCTGTGCCCCAAGCATTAATGAAGTTTCTGAGTTCTAGTCCGTTATCGTTCTTAGGCAACTCTGGGCTGTGCATCAGCTGTGATAAACTAGATGTCTTAACTTGCAACAGAAGTAGCAGTATCAAACCTTGTGCTAGTCTTTCAAGTTCTCGTGATAGCTCTCGTCTTAGCAATATACAAATTGCAATGATAGCTCTCGGATCTTCACTTTTTATTGTTTGTGTGCTTCTTGGGTTGGTTTATAAGTTTGTTTATAGCAGAAGAAACAAGAAAAGAATTGAGACGTCTGCTCAAGTAGGAACAACTTCCTTGCTCATTGACAGGGTAATAAAGGCTACTAATAATCTAGATGAACGTTTTGTCATTGGGAGAGGAGCACATGGAGTTGTTTATAAGGCTTCCCTTGATTCAGAAAGAACTTTTGCTGTAAAGAAGCTTACATTTGAAGGATGTAAAGGGGGAAGTCAGAGTATGGTTAGAGAAATTCAAACTGTCGGTATCATCAAGCACCGGAACCTGATCGCTTTGGAAGATTTTTGGTTGGGAAAGGACCATGGTCTATTACTTTACAGATACCAGCCTAATGGAAGCCTTTATGATGTATTGCATGAGATGAATCCAGCTCCAACTCTAACATGGGAAGTCCGTCATAATATGGCCATTGGTATTGCACATGGATTGGCATATCTCCATCACGATTGTGTTCCTCCTATAATACATCGAGACATCAAACCGCAGAATATACTTCTAGATTCGGAGATGGAACCTCGTATTGCTGATTTTGGTCTTGCAAAGCTGCTGGATCAAACTTCTGCGCCAACAGCTTCATCTTCGTTTGCAGGCACAATTGGCTACATTGCTCCAGAGAATGCATTTTCAGCAGCAAAGAGCAAAGCTTCAGACGTGTACAGTTATGGGGTGGTTTTACTCGAGCTGATAACGAGAAAGAAGCCATCCGATCTATCGTTTACGGAGGTAGGGAGTATCATGGCTTGGGTTCGATCGGTTTGGAACGAGACACAAGAAATAGATAGTATTGTTGATCCAAGGCTTGTGGAAGAACTTGTAGATTCTGATGGGATGGAGGAGATTAAGAAGGTGCTTGTGGTGGCTTTGAGATGCACCGAAAAGGAACCTAACAAGAGACCTACAATGAGAGATGTTGTCAGCCACTTGATTGATTCAAAGATGAGTCATTAA 3342 41.2 MSGTVGLVVMQLVSRHFLLLVCFSFPIYVVSGLNSDGLALLSLQSRWTTHTPFVPLWNASDSTPCSWFGIACDNNLRVITMNLSFHGISGQLGPEISRLTQLRTIDLLTNNFYGAIPNGISNCSHLEYLDLSFNQFGGEIPQSLMLLRNLTSLNFHGNVLTGVIPNSLFQIVSLQYVYLSENNLNGSIPSNVGNLRQVLHLYLYGNELSGTIPSSIGNCSQLMELYLDQNQLVGVLPNSLNNLDNLVNLGVSRNNLEGPIPLGSGGCQSLEFIDLSFNGYTGGIPAGMGNCSHLRTILLVNSSLTGHIPSTFGQLSNLMAIDLSRNQLSGSIPSELGACKSLKKLELYDNQLEGHIPSELGLLSGLETLRLFSNRLTGEIPINIWKIASLQHISVYNNNLSGELPLIITELKHLKNISVFNNHFSGVIPQSLGLNSSLEQVEFTNNQFTGQIPPNLCSGKTLRLLNLGLNRFQGSVLSDIGTCVTLQRLILRKNNLTGVLPEFMRNHGLRFMDASENNLNGTIPSSLGNCINLTSINLSRNKITGLIPNELGNLVNLQSLSLSHNYLEGHLPSSLSHFTKLDKFDVGFNLLNGSVPHSLASWKVISTLILKENRFTGGIPNVLSELESLSLLDLGGNLFGGEIPSSIGALKNLFYSLNLSNNGLTGQLPPELRSLAMLEKLDISHNNLNGSLRVLDELSSSIVELNISDNFFTGPVPQALMKFLSSSPLSFLGNSGLCISCDKLDVLTCNRSSSIKPCASLSSSRDSSRLSNIQIAMIALGSSLFIVCVLLGLVYKFVYSRRNKKRIETSAQVGTTSLLIDRVIKATNNLDERFVIGRGAHGVVYKASLDSERTFAVKKLTFEGCKGGSQSMVREIQTVGIIKHRNLIALEDFWLGKDHGLLLYRYQPNGSLYDVLHEMNPAPTLTWEVRHNMAIGIAHGLAYLHHDCVPPIIHRDIKPQNILLDSEMEPRIADFGLAKLLDQTSAPTASSSFAGTIGYIAPENAFSAAKSKASDVYSYGVVLLELITRKKPSDLSFTEVGSIMAWVRSVWNETQEIDSIVDPRLVEELVDSDGMEEIKKVLVVALRCTEKEPNKRPTMRDVVSHLIDSKMSH 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 956978 960417 + Maker00024017 Lcy13g0097 650402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0097 1113 Pfam Leucine rich repeat 515 567 IPR001611 GO:0005515(InterPro)
Lcy13g0097 1113 Pfam Leucine rich repeat 292 352 IPR001611 GO:0005515(InterPro)
Lcy13g0097 1113 ProSitePatterns Protein kinases ATP-binding region signature. 836 859 IPR017441 GO:0005524(InterPro)
Lcy13g0097 1113 Pfam Leucine Rich repeat 122 139 IPR001611 GO:0005515(InterPro)
Lcy13g0097 1113 Gene3D Transferase(Phosphotransferase) domain 1 908 1113 - -
Lcy13g0097 1113 Pfam Leucine Rich Repeat 149 169 IPR001611 GO:0005515(InterPro)
Lcy13g0097 1113 Pfam Leucine Rich Repeat 628 650 IPR001611 GO:0005515(InterPro)
Lcy13g0097 1113 Pfam Leucine Rich Repeat 173 195 IPR001611 GO:0005515(InterPro)
Lcy13g0097 1113 Pfam Leucine Rich Repeat 656 675 IPR001611 GO:0005515(InterPro)
Lcy13g0097 1113 Pfam Leucine Rich Repeat 200 219 IPR001611 GO:0005515(InterPro)
Lcy13g0097 1113 Pfam Leucine Rich Repeat 222 243 IPR001611 GO:0005515(InterPro)
Lcy13g0097 1113 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 310 407 - -
Lcy13g0097 1113 SUPERFAMILY Protein kinase-like (PK-like) 810 1106 IPR011009 -
Lcy13g0097 1113 ProSitePatterns Serine/Threonine protein kinases active-site signature. 952 964 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0097 1113 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 33 187 - -
Lcy13g0097 1113 Gene3D Ribonuclease Inhibitor 33 192 IPR032675 -
Lcy13g0097 1113 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Lcy13g0097 1113 ProSiteProfiles Protein kinase domain profile. 830 1113 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0097 1113 SMART serkin_6 830 1107 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0097 1113 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 794 906 - -
Lcy13g0097 1113 SMART LRR_typ_2 626 650 IPR003591 -
Lcy13g0097 1113 SMART LRR_typ_2 675 698 IPR003591 -
Lcy13g0097 1113 SMART LRR_typ_2 99 123 IPR003591 -
Lcy13g0097 1113 SMART LRR_typ_2 363 387 IPR003591 -
Lcy13g0097 1113 SMART LRR_typ_2 195 219 IPR003591 -
Lcy13g0097 1113 SMART LRR_typ_2 315 339 IPR003591 -
Lcy13g0097 1113 SMART LRR_typ_2 147 171 IPR003591 -
Lcy13g0097 1113 SMART LRR_typ_2 220 242 IPR003591 -
Lcy13g0097 1113 SMART LRR_typ_2 530 553 IPR003591 -
Lcy13g0097 1113 SMART LRR_typ_2 554 578 IPR003591 -
Lcy13g0097 1113 Pfam Protein kinase domain 835 1105 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0097 1113 Gene3D Ribonuclease Inhibitor 362 746 IPR032675 -
Lcy13g0097 1113 Gene3D Ribonuclease Inhibitor 196 361 IPR032675 -
Lcy13g0097 1113 SUPERFAMILY RNI-like 417 740 - -
Lcy13g0097 1113 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 641 1106 IPR050647 -
Lcy13g0097 1113 SUPERFAMILY RNI-like 81 429 - -
Lcy13g0097 1113 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 189 284 - -
Lcy13g0097 1113 Gene3D Phosphorylase Kinase; domain 1 794 906 - -
Lcy13g0097 1113 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 460 746 - -
Lcy13g0097 1113 FunFam Serine/threonine-protein kinase-like protein CCR4 907 1113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0092 Lcy-Chr13:927901 Lcy13g0097 Lcy-Chr13:956978 3.16E-30 dispersed
Lcy13g0097 Lcy-Chr13:956978 Lcy9g1415 Lcy-Chr9:39135363 2.86E-69 dispersed
Lcy13g0093 Lcy-Chr13:932110 Lcy13g0097 Lcy-Chr13:956978 1.04E-230 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65544 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0097 K28089 - csv:101204561 1705.26