Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0109 ATGAGTAATTGGCTGGGTTTTTCTCTCACTCCCCACCTCAGACTCCACGACGCCGCCGCCGCCGCCGACGATCAACCCAACCCCGGCAACTTCCCGCCCCTCATGCCTCTCCGCTCTGATGGATCTCTCTGTATCGCCACCGCCTCCGCCGCCGCCCACGATTGGAGATCATACGAGAATGAAATGGGTGCAACGAATGAAGAGGAAAGTCCAAAACTTGAGGACTTTTTGGGGAATTGCTATTCAACAAACTCACCGCCAAACGATCAAACCCATAATAATAACAACTTTATTCACCCCAATAATAATAATAATAACAACAATAATGACGATGATAATTACAATTACCAGTCCTGGTTGGGGCCGACGACGGCCACTTCGAGTTCGCAAAACGAGTGTGGGTTTCAATCTCTGTCGCTTGGGATGAGCCCCAACTCCCAAAACGACATCGCTTCGCTGTCGTCCTCCTCGTCGCCGCCGCCGCCCCATGCGGCGGCGGATTCCCGGAAGCGCCCGGTCCCGGTGGGGAAGGCTCTAATCAAAGAACCTGTTCCGAGAAAGTCCATCGATACCTTTGGACAGAGAACCTCTCAGTTCCGCGGTGTCACAAGGCATAGATGGACTGGAAGATATGAGGCACATTTATGGGACAACAGCTGTAGAAAAGAGGGCCAAACAAGGAAGGGAAGGCAAGGTGGTTATGATAAGGAAGAAAAAGCGGCACGAGCGTATGATTTAGCTGCGCTAAAGTATTGGGGACCGACGACGCATATAAATTTTCCCTTGAGCACGTACGAAAATGAGCTGGAAGAGATGAAAAACATGACTCGACAGGAGTTCGTAGCCAACTTGAGAAGAAAAAGCAGTGGATTCTCAAGAGGAGCTTCAATGTACAGAGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATTGGAAGGGTTGCAGGAAATAAAGATTTGTACCTCGGCACATTTAGCACACAAGAGGAGGCGGCGGAGGCCTACGACATAGCGGCCATCAAGTTTAGGGGGACGAGTGCGGTGACGAATTTCGACATTAGTAGGTATGACGTGAAGAGGATTTGCTCTAGTTCAACTTTGATTGCTGGTGATCTTGCGAAGCGTTCGCCATTGAAAGATGGTACTCCCACGACGACCGAGGACTATACTGCTTGTGCTTCGCCATCGTCCTCGCAACCTCTCTTGGCCATCACTGGCGACGGTGGTGCTGAGAGCCACCACGAGTTGGGGGACGTGGTTTGGTGTGACAATGTTGCTGCTGACGACGATAATCAACAACACGAGAATGCAGCGAAGATGAACAATGACTTGAGTTTGATGGGTTCGAGCAATAGGACGGATCCGTCGAAGTGTTCTACGATGCAGAACAACGGGGAGTTCGGGATTGGGGCCGGGGTCGGGGGAGGCGAGTATTCACAAGGCTATTTCTCAATGCAAGAGGCAAAATATGAGGATGGGAATGATGAAGGGGATCAAAATAGGCAGCTGGGGAATAGTAGTGTGACATTAGCTCATCATCATGTTCCAATGTTTGCTTTATGGAATGAATGA 1581 50.16 MSNWLGFSLTPHLRLHDAAAAADDQPNPGNFPPLMPLRSDGSLCIATASAAAHDWRSYENEMGATNEEESPKLEDFLGNCYSTNSPPNDQTHNNNNFIHPNNNNNNNNNDDDNYNYQSWLGPTTATSSSQNECGFQSLSLGMSPNSQNDIASLSSSSSPPPPHAAADSRKRPVPVGKALIKEPVPRKSIDTFGQRTSQFRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYENELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPLKDGTPTTTEDYTACASPSSSQPLLAITGDGGAESHHELGDVVWCDNVAADDDNQQHENAAKMNNDLSLMGSSNRTDPSKCSTMQNNGEFGIGAGVGGGEYSQGYFSMQEAKYEDGNDEGDQNRQLGNSSVTLAHHHVPMFALWNE 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1031891 1035173 - Maker00023522 Lcy13g0109 650414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0109 526 FunFam AP2-like ethylene-responsive transcription factor ANT 197 263 - -
Lcy13g0109 526 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 117 397 - -
Lcy13g0109 526 MobiDBLite consensus disorder prediction 378 412 - -
Lcy13g0109 526 MobiDBLite consensus disorder prediction 382 406 - -
Lcy13g0109 526 MobiDBLite consensus disorder prediction 81 175 - -
Lcy13g0109 526 Gene3D AP2/ERF domain 197 263 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0109 526 Gene3D AP2/ERF domain 297 357 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0109 526 ProSiteProfiles AP2/ERF domain profile. 297 355 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0109 526 FunFam AP2-like ethylene-responsive transcription factor 296 357 - -
Lcy13g0109 526 CDD AP2 197 263 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0109 526 SUPERFAMILY DNA-binding domain 197 263 IPR016177 GO:0003677(InterPro)
Lcy13g0109 526 SMART rav1_2 297 361 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0109 526 SMART rav1_2 198 267 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0109 526 PRINTS Ethylene responsive element binding protein signature 199 210 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0109 526 PRINTS Ethylene responsive element binding protein signature 337 357 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0109 526 ProSiteProfiles AP2/ERF domain profile. 198 261 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0109 526 SUPERFAMILY DNA-binding domain 296 357 IPR016177 GO:0003677(InterPro)
Lcy13g0109 526 CDD AP2 296 357 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0109 526 MobiDBLite consensus disorder prediction 81 162 - -
Lcy13g0109 526 Pfam AP2 domain 198 253 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g0109 526 Pfam AP2 domain 298 347 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0392 Lcy-Chr10:8243982 Lcy13g0109 Lcy-Chr13:1031891 3.40E-74 dispersed
Lcy13g0109 Lcy-Chr13:1031891 Lcy4g1350 Lcy-Chr4:32415061 3.40E-111 dispersed
Lcy13g0109 Lcy-Chr13:1031891 Lcy9g2006 Lcy-Chr9:44947296 8.19E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19332 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0109 K09285 - csv:101205762 771.926