Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g0109 | ATGAGTAATTGGCTGGGTTTTTCTCTCACTCCCCACCTCAGACTCCACGACGCCGCCGCCGCCGCCGACGATCAACCCAACCCCGGCAACTTCCCGCCCCTCATGCCTCTCCGCTCTGATGGATCTCTCTGTATCGCCACCGCCTCCGCCGCCGCCCACGATTGGAGATCATACGAGAATGAAATGGGTGCAACGAATGAAGAGGAAAGTCCAAAACTTGAGGACTTTTTGGGGAATTGCTATTCAACAAACTCACCGCCAAACGATCAAACCCATAATAATAACAACTTTATTCACCCCAATAATAATAATAATAACAACAATAATGACGATGATAATTACAATTACCAGTCCTGGTTGGGGCCGACGACGGCCACTTCGAGTTCGCAAAACGAGTGTGGGTTTCAATCTCTGTCGCTTGGGATGAGCCCCAACTCCCAAAACGACATCGCTTCGCTGTCGTCCTCCTCGTCGCCGCCGCCGCCCCATGCGGCGGCGGATTCCCGGAAGCGCCCGGTCCCGGTGGGGAAGGCTCTAATCAAAGAACCTGTTCCGAGAAAGTCCATCGATACCTTTGGACAGAGAACCTCTCAGTTCCGCGGTGTCACAAGGCATAGATGGACTGGAAGATATGAGGCACATTTATGGGACAACAGCTGTAGAAAAGAGGGCCAAACAAGGAAGGGAAGGCAAGGTGGTTATGATAAGGAAGAAAAAGCGGCACGAGCGTATGATTTAGCTGCGCTAAAGTATTGGGGACCGACGACGCATATAAATTTTCCCTTGAGCACGTACGAAAATGAGCTGGAAGAGATGAAAAACATGACTCGACAGGAGTTCGTAGCCAACTTGAGAAGAAAAAGCAGTGGATTCTCAAGAGGAGCTTCAATGTACAGAGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATTGGAAGGGTTGCAGGAAATAAAGATTTGTACCTCGGCACATTTAGCACACAAGAGGAGGCGGCGGAGGCCTACGACATAGCGGCCATCAAGTTTAGGGGGACGAGTGCGGTGACGAATTTCGACATTAGTAGGTATGACGTGAAGAGGATTTGCTCTAGTTCAACTTTGATTGCTGGTGATCTTGCGAAGCGTTCGCCATTGAAAGATGGTACTCCCACGACGACCGAGGACTATACTGCTTGTGCTTCGCCATCGTCCTCGCAACCTCTCTTGGCCATCACTGGCGACGGTGGTGCTGAGAGCCACCACGAGTTGGGGGACGTGGTTTGGTGTGACAATGTTGCTGCTGACGACGATAATCAACAACACGAGAATGCAGCGAAGATGAACAATGACTTGAGTTTGATGGGTTCGAGCAATAGGACGGATCCGTCGAAGTGTTCTACGATGCAGAACAACGGGGAGTTCGGGATTGGGGCCGGGGTCGGGGGAGGCGAGTATTCACAAGGCTATTTCTCAATGCAAGAGGCAAAATATGAGGATGGGAATGATGAAGGGGATCAAAATAGGCAGCTGGGGAATAGTAGTGTGACATTAGCTCATCATCATGTTCCAATGTTTGCTTTATGGAATGAATGA | 1581 | 50.16 | MSNWLGFSLTPHLRLHDAAAAADDQPNPGNFPPLMPLRSDGSLCIATASAAAHDWRSYENEMGATNEEESPKLEDFLGNCYSTNSPPNDQTHNNNNFIHPNNNNNNNNNDDDNYNYQSWLGPTTATSSSQNECGFQSLSLGMSPNSQNDIASLSSSSSPPPPHAAADSRKRPVPVGKALIKEPVPRKSIDTFGQRTSQFRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYENELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPLKDGTPTTTEDYTACASPSSSQPLLAITGDGGAESHHELGDVVWCDNVAADDDNQQHENAAKMNNDLSLMGSSNRTDPSKCSTMQNNGEFGIGAGVGGGEYSQGYFSMQEAKYEDGNDEGDQNRQLGNSSVTLAHHHVPMFALWNE | 526 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 1031891 | 1035173 | - | Maker00023522 | Lcy13g0109 | 650414 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g0109 | 526 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 197 | 263 | - | - | |
Lcy13g0109 | 526 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 117 | 397 | - | - | |
Lcy13g0109 | 526 | MobiDBLite | consensus disorder prediction | 378 | 412 | - | - | |
Lcy13g0109 | 526 | MobiDBLite | consensus disorder prediction | 382 | 406 | - | - | |
Lcy13g0109 | 526 | MobiDBLite | consensus disorder prediction | 81 | 175 | - | - | |
Lcy13g0109 | 526 | Gene3D | AP2/ERF domain | 197 | 263 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0109 | 526 | Gene3D | AP2/ERF domain | 297 | 357 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0109 | 526 | ProSiteProfiles | AP2/ERF domain profile. | 297 | 355 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0109 | 526 | FunFam | AP2-like ethylene-responsive transcription factor | 296 | 357 | - | - | |
Lcy13g0109 | 526 | CDD | AP2 | 197 | 263 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0109 | 526 | SUPERFAMILY | DNA-binding domain | 197 | 263 | IPR016177 | GO:0003677(InterPro) | |
Lcy13g0109 | 526 | SMART | rav1_2 | 297 | 361 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0109 | 526 | SMART | rav1_2 | 198 | 267 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0109 | 526 | PRINTS | Ethylene responsive element binding protein signature | 199 | 210 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0109 | 526 | PRINTS | Ethylene responsive element binding protein signature | 337 | 357 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0109 | 526 | ProSiteProfiles | AP2/ERF domain profile. | 198 | 261 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0109 | 526 | SUPERFAMILY | DNA-binding domain | 296 | 357 | IPR016177 | GO:0003677(InterPro) | |
Lcy13g0109 | 526 | CDD | AP2 | 296 | 357 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0109 | 526 | MobiDBLite | consensus disorder prediction | 81 | 162 | - | - | |
Lcy13g0109 | 526 | Pfam | AP2 domain | 198 | 253 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g0109 | 526 | Pfam | AP2 domain | 298 | 347 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0392 | Lcy-Chr10:8243982 | Lcy13g0109 | Lcy-Chr13:1031891 | 3.40E-74 | dispersed | |
Lcy13g0109 | Lcy-Chr13:1031891 | Lcy4g1350 | Lcy-Chr4:32415061 | 3.40E-111 | dispersed | |
Lcy13g0109 | Lcy-Chr13:1031891 | Lcy9g2006 | Lcy-Chr9:44947296 | 8.19E-117 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19332 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g0109 | K09285 | - | csv:101205762 | 771.926 |