Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0134 TTAGAAACTTTCCTGACTTGGCTAATCTTTTCCTCTAATGCCTTTTGGGCGGTGAAATGCGGACGTAGCAATAACGGAGGAGTTTTGCTTCTCTGCGGTGCTTCTGTTAGGAAATTTTGTTTGATGTCTCGTATGGCGCACTTGCGCTTCTGTTTTACTTTCCTCTATTCGCGTTTTACATTTGGTAGTTCTGAAGTTAAAGATGATATGGCTGGTTTGGCTCCTGAAGGATCTCAATTTGATGCACGTCAGTATGACACTAAAATGAATGAGTTGCTTTCAGCTGATGGACAGGATTTCTTCACCTCATACGATGAAGTTTATGATAGTTTTGATTCTATGGGTCTGCAAGAAAATCTTCTCAGAGGCATCTATGCGTATGGATTCGAGAAGCCATCTGCAATTCAGCAAAGGGGGATCGTTCCTTTCTGCAAGGGGCTTGATGTGATCCAACAAGCTCAGTCTGGAACAGGGAAGACTGCAACTTTCTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTCGTGCAATGTCAGGCTTTGGTCTTAGCACCCACTAGGGAACTTGCACAACAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTTGGTGTGAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTACGTGAGGACCAACGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGTAGACAGTCACTTCGTCCTGACTGCATTCGTATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGTGGATTCAAAGATCAGGTTTGTCATTTTACTTTCATGAATCTAGTGTGTGGAAAAGTCCTCATTACGACAGATCTATTGGCCCGTGGTATCGATGTCCAGCAGGTTTCTCTCGTTATTAACTATGATCTTCCGACACAACCAGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAGGGTGTTGCCATCAACTTTGTAACTAACGAAGATGAAAGAATGCTATTTGACATTCAGAAGTTTTACAATGTGGTAATTGAAGAGCTGCCAGCTAATGTTGCTGATCTCCTGTGA 1101 43.14 LETFLTWLIFSSNAFWAVKCGRSNNGGVLLLCGASVRKFCLMSRMAHLRFCFTFLYSRFTFGSSEVKDDMAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIRMFVLDEADEMLSRGFKDQVCHFTFMNLVCGKVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNEDERMLFDIQKFYNVVIEELPANVADLL 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1298270 1301448 - Maker00023748 Lcy13g0134 650439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0134 366 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 310 IPR014001 -
Lcy13g0134 366 SMART helicmild6 258 327 IPR001650 -
Lcy13g0134 366 CDD SF2_C_DEAD 284 336 - -
Lcy13g0134 366 Pfam DEAD/DEAH box helicase 134 274 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Lcy13g0134 366 PANTHER RNA HELICASE 282 352 - GO:0002183(PANTHER)|GO:0003743(PANTHER)|GO:0010494(PANTHER)
Lcy13g0134 366 Pfam Helicase conserved C-terminal domain 284 327 IPR001650 -
Lcy13g0134 366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 364 IPR027417 -
Lcy13g0134 366 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 256 264 IPR000629 -
Lcy13g0134 366 SMART ultradead3 128 319 IPR014001 -
Lcy13g0134 366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 274 IPR027417 -
Lcy13g0134 366 Gene3D - 80 279 IPR027417 -
Lcy13g0134 366 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 170 366 IPR001650 -
Lcy13g0134 366 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 109 137 IPR014014 GO:0003724(InterPro)
Lcy13g0134 366 Gene3D - 283 364 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0401 Lcy-Chr12:4901404 Lcy13g0134 Lcy-Chr13:1298270 1.90E-89 dispersed
Lcy13g0134 Lcy-Chr13:1298270 Lcy13g2195 Lcy-Chr13:40870732 1.03E-192 dispersed
Lcy13g0134 Lcy-Chr13:1298270 Lcy3g2226 Lcy-Chr3:49077602 9.19E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0134 K03257 - csv:101223055 400.593