Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0135 ATGGGAAACCAGAAGCAAAAGTGGACGCAGGAGGAAGAAGATGCACTCTTGGCCGGCGTACAGAAGCACGGTCCCGGGAAGTGGAAGAACATTCTCAAAGATCCTGAATTCGCTCCGTTTCTCACTCATCGCTCGAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTTAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGCTCCTAAAGCAAAAGCTATTGTTGCTCCTCCACTTTCTAACAGCCAAAACTCTGCTCCTACTAGGTTTAATGCATCCGCTGATACTGCTGGGGACGATCCACCAAACAGCAGCACACAGGAAGGAAAAAATGTCCCAAGGTATCATACAATGATTTTTGAAGCCCTTTCGACCATAAAAGATTCAAATGGATGTGACATAGGCACAATTGTTAACTTTATTGAGCAAAGACATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAGAATTGCTACAAAGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACACCCAAACAAAAAGATGTCAGGCAACGGATATCGCAATATACCACGGGAGGGTTGATGCCATCAGGGGAGACGGTGGAAGATGCAGCGAAAGCGGCTGCCTATAAAGTGGCTGATGCAGAGAACAAATCTTTCTTAGCTGCTGAAGCTGTCAAGGAGGCAGAGAGAATTGCAAAGATGGCTGAAGATACAGATACTGTGCTACACATCATAAAAGAGATGTATGAAAAATGTAAGGGAAGTTCTCGTGGTGAAATTGTTCTCTTGGCTTAG 846 44.09 MGNQKQKWTQEEEDALLAGVQKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAPKAKAIVAPPLSNSQNSAPTRFNASADTAGDDPPNSSTQEGKNVPRYHTMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRISQYTTGGLMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDTVLHIIKEMYEKCKGSSRGEIVLLA 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1304067 1308541 - Maker00023569 Lcy13g0135 650440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0135 281 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lcy13g0135 281 PANTHER SINGLE MYB HISTONE 4 1 278 IPR044597 GO:0003691(InterPro)
Lcy13g0135 281 FunFam Telomere repeat-binding factor 1 2 58 - -
Lcy13g0135 281 Gene3D - 8 80 - -
Lcy13g0135 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lcy13g0135 281 SMART sant 4 59 IPR001005 -
Lcy13g0135 281 CDD SANT_TRF 6 56 - -
Lcy13g0135 281 MobiDBLite consensus disorder prediction 58 116 - -
Lcy13g0135 281 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Lcy13g0135 281 SMART h15plus2 112 177 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lcy13g0135 281 MobiDBLite consensus disorder prediction 80 115 - -
Lcy13g0135 281 FunFam Telomere repeat-binding factor 1 8 87 - -
Lcy13g0135 281 MobiDBLite consensus disorder prediction 1 20 - -
Lcy13g0135 281 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lcy13g0135 281 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lcy13g0135 281 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lcy13g0135 281 SUPERFAMILY Winged helix DNA-binding domain 112 193 IPR036390 -
Lcy13g0135 281 Gene3D - 111 198 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0135 K09422 - - csv:101202785 481.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0135 Lcy-Chr13:1304067 Lcy1g0906 Lcy-Chr1:7919365 4.73E-14 dispersed
Lcy13g0135 Lcy-Chr13:1304067 Lcy6g0444 Lcy-Chr6:4154164 4.16E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g0444 . 1 344 Single Myb Histone (SMH) Gene Family AT1G49950 54.6 2.0e-67 253.4
Lcy13g0135 . 1 280 Single Myb Histone (SMH) Gene Family AT1G17520 50.2 4.3e-67 252.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013733 1 1 1 0 1 0 2 0 0 0 0 0 1 1 1 2 0 2 1 0 0 0 1 1 1 0 1 4 2 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19335 None None None None Lcy TF