Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0135 ATGGGAAACCAGAAGCAAAAGTGGACGCAGGAGGAAGAAGATGCACTCTTGGCCGGCGTACAGAAGCACGGTCCCGGGAAGTGGAAGAACATTCTCAAAGATCCTGAATTCGCTCCGTTTCTCACTCATCGCTCGAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTTAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGCTCCTAAAGCAAAAGCTATTGTTGCTCCTCCACTTTCTAACAGCCAAAACTCTGCTCCTACTAGGTTTAATGCATCCGCTGATACTGCTGGGGACGATCCACCAAACAGCAGCACACAGGAAGGAAAAAATGTCCCAAGGTATCATACAATGATTTTTGAAGCCCTTTCGACCATAAAAGATTCAAATGGATGTGACATAGGCACAATTGTTAACTTTATTGAGCAAAGACATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAGAATTGCTACAAAGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACACCCAAACAAAAAGATGTCAGGCAACGGATATCGCAATATACCACGGGAGGGTTGATGCCATCAGGGGAGACGGTGGAAGATGCAGCGAAAGCGGCTGCCTATAAAGTGGCTGATGCAGAGAACAAATCTTTCTTAGCTGCTGAAGCTGTCAAGGAGGCAGAGAGAATTGCAAAGATGGCTGAAGATACAGATACTGTGCTACACATCATAAAAGAGATGTATGAAAAATGTAAGGGAAGTTCTCGTGGTGAAATTGTTCTCTTGGCTTAG 846 44.09 MGNQKQKWTQEEEDALLAGVQKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAPKAKAIVAPPLSNSQNSAPTRFNASADTAGDDPPNSSTQEGKNVPRYHTMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRISQYTTGGLMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDTVLHIIKEMYEKCKGSSRGEIVLLA 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1304067 1308541 - Maker00023569 Lcy13g0135 650440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0135 281 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lcy13g0135 281 PANTHER SINGLE MYB HISTONE 4 1 278 IPR044597 GO:0003691(InterPro)
Lcy13g0135 281 FunFam Telomere repeat-binding factor 1 2 58 - -
Lcy13g0135 281 Gene3D - 8 80 - -
Lcy13g0135 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lcy13g0135 281 SMART sant 4 59 IPR001005 -
Lcy13g0135 281 CDD SANT_TRF 6 56 - -
Lcy13g0135 281 MobiDBLite consensus disorder prediction 58 116 - -
Lcy13g0135 281 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Lcy13g0135 281 SMART h15plus2 112 177 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lcy13g0135 281 MobiDBLite consensus disorder prediction 80 115 - -
Lcy13g0135 281 FunFam Telomere repeat-binding factor 1 8 87 - -
Lcy13g0135 281 MobiDBLite consensus disorder prediction 1 20 - -
Lcy13g0135 281 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lcy13g0135 281 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lcy13g0135 281 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lcy13g0135 281 SUPERFAMILY Winged helix DNA-binding domain 112 193 IPR036390 -
Lcy13g0135 281 Gene3D - 111 198 IPR036388 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0135 Lcy-Chr13:1304067 Lcy1g0906 Lcy-Chr1:7919365 4.73E-14 dispersed
Lcy13g0135 Lcy-Chr13:1304067 Lcy6g0444 Lcy-Chr6:4154164 4.16E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19335 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0135 K09422 - csv:101202785 481.1