Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0137 ATGATGGAAGAGATGTCTCCTGCTGTTTCCTTGACCCTTAGTTTGGGTAACCCAAAGTCTGATAGCTCAGGAAGTCCCAGCCATGTCGAATTTACACGGCTAAAGTTGGTGACAGACACGGTAAATTTGTTCTCTGCATCGTCCCCTGACTCGGGTTCTATTGGTAATGGTAGTTGCCATGATTTTGATGGTATAGTCGACAGCATAACTGTGTCGCAAAAGAGTGACGATGGTCGAGGTAGAGACGGTTTTTGGGGGTTGTTGCCGGAGAATGGCACGAATTTGACTGTAGATAAGGAAGATGCAGCCTTATCTACTATGGATGACCCTGATGAAATGATGGATGATGGGTTGTTTGCAATTGATGGTGGTTCAAATATCAATGTGCAAGAAGTTGTGAAAATTGGAGATGTTAGTAATGGTCATATTGTTGCCAAGGCTATCATCTTGGTGGAATCCGGGAAGATTCCTACTAGTGAACTTATCGTTGCAACGGTGAGCCCAGACTTAGAAGTATCTCCTTCGTCGGAGCTAAACGTCCCCGCGGTAGTTTTCCAATCGAAAGGGGGGAATGGTGTTCATAAAAGCATTCGTAGTGTCTTTGAACGAGACTGTGTCCCCCTTTGGGGTTCTGTATCGATTTGTGGTAGAAGACCAGAAATGGAAGACGCAATTGCCGCGGTTCCTTGTTTTTCGAAGATTCCTATCAAAATGCTTGTAGGAAATGGTTTGGTTAATGGAATGGGTCAAAGTTTAACACATCTCAACAGCCACTTTTTTGGTGTTTATGATGGACATGGGGGCTCTCAGGTTGCTGATTATTGTCGAGAGCGCTTACACTTGGCATTAGCTGAAGAGATAGGAGGATTTAAACAAAATCTAAATAATGGAAGCAATGGAGAGAACTGGCAGCAGGATTGGGAGAGAACCTTCAACAACTGCTTTCTTAGGGTGGATGATGAAATAGAAGGAAAAGTTGGTAGAACAATCAGTGGGAGCGATGGAGATGTTTCCAGTACTAGCTTCGAGCCTGTAGCCCCGGAAACTGTTGGCTCTACTGCTGTTGTTGCCTTGGTCTGTTCATCACACATCATAGTTGCAAACTGTGGGGATTCAAGAGCAGTCCTATGCCGTGGCAAAGAACCTATGGCGCTATCAGTCGATCATAAACCAAATCGGGAAGATGAATATGCTAGGATCGAATCATCTGGAGGCAAGGTCATCCAGTGGAACGGACATCGTGTGTTCGGTGTTCTTGCAATGTCAAGATCCATTGGTGATAGATATTTGAAGCCATGGATTATTCCTGATCCAGAAGTCATGTTCGTCCCTCGTGCAAAAGAAGACGAATGTCTTATATTAGCCAGCGATGGCTTGTGGGATGTGATGACAAACGAGGAAGTCTGTGAAGTGGCTCGAAGGCGGATTCTGCTTTGGCACAAAAAACACGGGGCTTCGTCTCTTGCCGGTCGGGGCACGGGAGTTGACCCAGCTGCACAAGCTGCAGCAGATTACCTCTCAATGCTTGCTCTCCAAAAGGGGAGCAAAGACAACATCTCCATCATTGTAGTGGACTTGAAAGCTCAAAGGAAGTTCAAGACCAAATCTTGA 1611 45.56 MMEEMSPAVSLTLSLGNPKSDSSGSPSHVEFTRLKLVTDTVNLFSASSPDSGSIGNGSCHDFDGIVDSITVSQKSDDGRGRDGFWGLLPENGTNLTVDKEDAALSTMDDPDEMMDDGLFAIDGGSNINVQEVVKIGDVSNGHIVAKAIILVESGKIPTSELIVATVSPDLEVSPSSELNVPAVVFQSKGGNGVHKSIRSVFERDCVPLWGSVSICGRRPEMEDAIAAVPCFSKIPIKMLVGNGLVNGMGQSLTHLNSHFFGVYDGHGGSQVADYCRERLHLALAEEIGGFKQNLNNGSNGENWQQDWERTFNNCFLRVDDEIEGKVGRTISGSDGDVSSTSFEPVAPETVGSTAVVALVCSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIESSGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKEDECLILASDGLWDVMTNEEVCEVARRRILLWHKKHGASSLAGRGTGVDPAAQAAADYLSMLALQKGSKDNISIIVVDLKAQRKFKTKS 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1323540 1327393 + Maker00023306 Lcy13g0137 650442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0137 536 CDD PP2Cc 210 526 IPR001932 -
Lcy13g0137 536 SMART PP2C_4 198 524 IPR001932 -
Lcy13g0137 536 ProSiteProfiles PPM-type phosphatase domain profile. 208 526 IPR001932 -
Lcy13g0137 536 MobiDBLite consensus disorder prediction 1 27 - -
Lcy13g0137 536 MobiDBLite consensus disorder prediction 10 27 - -
Lcy13g0137 536 Pfam Protein phosphatase 2C 230 519 IPR001932 -
Lcy13g0137 536 ProSitePatterns PPM-type phosphatase domain signature. 259 267 IPR000222 GO:0043169(InterPro)
Lcy13g0137 536 PANTHER PROTEIN PHOSPHATASE 179 525 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy13g0137 536 FunFam Protein phosphatase 2C 16 196 536 - -
Lcy13g0137 536 SUPERFAMILY PP2C-like 199 527 IPR036457 -
Lcy13g0137 536 Gene3D - 195 536 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0137 Lcy-Chr13:1323540 Lcy6g0081 Lcy-Chr6:773112 1.34E-72 dispersed
Lcy11g0083 Lcy-Chr11:843135 Lcy13g0137 Lcy-Chr13:1323540 1.65E-33 transposed
Lcy13g2197 Lcy-Chr13:40895327 Lcy13g0137 Lcy-Chr13:1323540 3.15E-183 transposed
Lcy2g0859 Lcy-Chr2:7827168 Lcy13g0137 Lcy-Chr13:1323540 1.83E-67 transposed
Lcy6g0055 Lcy-Chr6:544538 Lcy13g0137 Lcy-Chr13:1323540 3.51E-17 transposed
Lcy11g0153 Lcy-Chr11:1691780 Lcy13g0137 Lcy-Chr13:1323540 1.78E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0137 K14497 - csv:101203499 996.882