Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0146 ATGATAAAAAGTTTGTTGTTTCAACAACAAGCTCAAGCTATGGAGGAAAATTTGTCGAATTTAACTTCAGCTTCTGGTGAAGCTAGTGCCTGCTCCGGCAACCGTTCCGATCAGATTCCGGCGAACTATTCCGGCGGCCAGTATTTTTCTGCCCCACCACCACCAAAAAAGAAGAGAAACCTCCCCGGAAATCCAGACCCGGATGCGGAAGTGATAGCTTTGTCACCGAAGACGCTAATGGCGACGAATAGATTCGTGTGCGAGATCTGCAACAAGGGGTTTCAGAGAGATCAGAATCTTCAGCTTCATAGAAGAGGGCACAATTTGCCATGGAAGTTGAAGCAAAGAGCAAACAAAGAGGTGATAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGCTGTGTTCACCATGATCCATCAAGGGCTCTTGGAGACTTGACAGGGATCAAGAAGCACTTTTGCAGAAAGCATGGTGAGAAGAAATGGAAATGTGATAAGTGCTCTAAGAGGTACGCAGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGCACCAGAGAGTACAGATGTGACTGTGGAACCCTTTTCTCAAGGAGGGATAGTTTCATCACCCACAGAGCATTTTGTGATGCTTTAGCAGAGGAAAGTGCAAGAGCCATTACATCAAACCCAATACTAATCACCAATAACAACAATAACCAAAATCAAAACCCTCCACTAATTTCCACTCCCATTTCTTCAATCCCTCACTTAAACTTCCAAACACAAACCCACTTCAACAACAACAACAACCCCTTAGACATCAACTCATTTTCCTTAAAAAAAGAACACCACCATCAACAAAACTCACCCAATAACAACAACAATTTCATTCCTCCATGGCTTTCCCAAGACCACCTTAATAATCACCATCAAAACCTCATCTTAAACCCTAATAACAGTCTTGGGCCCACTTCCCTTCATCACCATCTTCAAAGTGCTTCCCCGTCTCTTCCTCACATGTCAGCCACAGCACTTCTCCAGAAAGCAGCTCAAATGGGAGCTACCATGAGCAGCAGCAGCAACAACAATAATAATATTGCTGAGCAGCATCACGTGCCTGATTCTTCTGCCACCAACAATCCAAGTTGTAATTTTGGCCTTAACTTGTCCTCCTCACGTGACAATAATCAGATTTTGATGGGCAGTGAAGGTGCAGGGCTCTCTCATGCACTGCCACACTACAGGAACAAATCCAACAATGATGATAATAATAATAATAATGTTGGTGTTGGTCTTCTTGTTGGTCATTCTAATTCTTCTTCACTTCTTCTTCAAAGCACTTTCATCAGCAACAGCAACAGCAACAGCTCTACTACTTTTTCTCCCAGTGCTTTTGGAGGGGCTTCTTTTGAAATAGATGCATTTGGAGGGGTTTTGAAGAAAGATAATAGTGCAATTACAACAAGTGAAGGGTTGAGTACAAGAGATTTCTTGGGGCTGAGAGCAATTTCTCACAGTGAGTTTTTGAGTAATATGGCAGCTGCTGCTGGTTATGGAAATTGCATGAATGGGGCTGGTCAAAGCCCTCAAAGTCAAATTCAAAAGCAACCCAGCTGGCAAGGTTAG 1611 43.02 MIKSLLFQQQAQAMEENLSNLTSASGEASACSGNRSDQIPANYSGGQYFSAPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKEVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITSNPILITNNNNNQNQNPPLISTPISSIPHLNFQTQTHFNNNNNPLDINSFSLKKEHHHQQNSPNNNNNFIPPWLSQDHLNNHHQNLILNPNNSLGPTSLHHHLQSASPSLPHMSATALLQKAAQMGATMSSSSNNNNNIAEQHHVPDSSATNNPSCNFGLNLSSSRDNNQILMGSEGAGLSHALPHYRNKSNNDDNNNNNVGVGLLVGHSNSSSLLLQSTFISNSNSNSSTTFSPSAFGGASFEIDAFGGVLKKDNSAITTSEGLSTRDFLGLRAISHSEFLSNMAAAAGYGNCMNGAGQSPQSQIQKQPSWQG 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1423410 1426985 + Maker00023529 Lcy13g0146 650451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0146 536 FunFam protein indeterminate-domain 12-like 64 133 - -
Lcy13g0146 536 Gene3D Classic Zinc Finger 64 136 - -
Lcy13g0146 536 FunFam protein indeterminate-domain 5, chloroplastic-like 140 219 - -
Lcy13g0146 536 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 123 157 - -
Lcy13g0146 536 MobiDBLite consensus disorder prediction 345 374 - -
Lcy13g0146 536 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 188 224 - -
Lcy13g0146 536 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Lcy13g0146 536 MobiDBLite consensus disorder prediction 275 331 - -
Lcy13g0146 536 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Lcy13g0146 536 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 161 185 - -
Lcy13g0146 536 MobiDBLite consensus disorder prediction 42 69 - -
Lcy13g0146 536 Gene3D Classic Zinc Finger 139 220 - -
Lcy13g0146 536 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 507 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy13g0146 536 MobiDBLite consensus disorder prediction 283 331 - -
Lcy13g0146 536 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Lcy13g0146 536 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Lcy13g0146 536 SMART c2h2final6 162 182 IPR013087 -
Lcy13g0146 536 SMART c2h2final6 127 157 IPR013087 -
Lcy13g0146 536 SMART c2h2final6 85 107 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0146 Lcy-Chr13:1423410 Lcy1g1384 Lcy-Chr1:13398972 5.10E-109 dispersed
Lcy13g0146 Lcy-Chr13:1423410 Lcy3g2220 Lcy-Chr3:49025676 1.65E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19336 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0146 K25870 - csv:101204728 634.795