Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy13g0159 | ATGGATTCTTTCTGGTTTTTTGTGCAGCTCATCACAGCTGCAGCTTTCATAATATCTTCCACAATCATAATCCTCAAAACCTTCATCTCCTCCCCTCCTTCCCTACCTTCCGGCTCCCTCGGCCTCCCCGTCGTCGGCGAAACCCTCCGCTTCGTCGCCTCCGCCTACTCTCCCCACCCCGAGACCTTCATGGACATACGTCGCCGTCGGTATGGGAATGTTTTCAAGTCCCATATATTTGGAAGTCCAACAATTGTTTCAACTGATGCTGAAGTGAGTAGGTTTATTCTACAAAGTGATGCAAAGGCTTTTGTCCCATCTTATCCAAAATCTTTGACAGAATTGATGGGGAAGTCTTCTATTTTGCTCATCAATGGCACTTTCCATAGGAAAATTCATGGCCTCATTGGAGCTTTCTTCAAATCATCTCATCTCAAAGCTCAATTAACCATAGACATGCAAAAATATCTTCAAAATTCCATCTCTATTTGGAGTTCTTCTCAACACAATCCTATCCACATACAAGATGAAGCCAAAAATGCTAAAAGGAAAATGGTTGGATTTGTGCAAGAAATGATACAATCTAGAAGAAAGAAGATGAGAGAAAATTTGAAAAATAATATAGTTCTTCCAAAGGATGTTGTGGATGTTTTGTTGAATGATGGAAGCCAACAAGTTACAGATGAACTGATAGCAGAAAATATGATTGATATGATGATTCCAGGCCATGATTCAGTCCCAATCCTCATAACTTTGGCCATAAAATACCTTTCTGATTGCCCATCTGCCCTTCAACATTTGACGGAAGAAAACATGGAGTTGAAAAAACTGAAAACTCAGCTTGGAGAGCCATTGAAATGGAATGATTACTTGTCATTACCATTTACACAAAATGTCATATCAGAGACATTAAGGATGGGAAACATTATAACAGGAGTGATGAGAAAGGCCATGAAAGACATTGAAATAAAAGGGCATTTGATACCTAAAGGATGGTGTGTCCTTATATATTTTAGGTCAGTTCATCTTGATGAGAACCACTTTGAAAGCCCTTACAATTTCAATCCATGGAGGTGGCAAAATAAAGACTCAAACAGCTCTAATTTCACTCCTTTTGGAGGGGGATTAAGATTGTGCCCTGGACTTGACTTGGCTAGATTGGAAGCTTCCATTTTCTTACACCATTTTGTCACTGAATTCAGGTGGGTGGCTGAGGAAGACAAGATTATCAACTTCCCAACAGTAAGAATGAAGAAAGGAATGGCAGTTTGGGTAAAGAAGAGAGAAGATAATTAA | 1296 | 39.74 | MDSFWFFVQLITAAAFIISSTIIILKTFISSPPSLPSGSLGLPVVGETLRFVASAYSPHPETFMDIRRRRYGNVFKSHIFGSPTIVSTDAEVSRFILQSDAKAFVPSYPKSLTELMGKSSILLINGTFHRKIHGLIGAFFKSSHLKAQLTIDMQKYLQNSISIWSSSQHNPIHIQDEAKNAKRKMVGFVQEMIQSRRKKMRENLKNNIVLPKDVVDVLLNDGSQQVTDELIAENMIDMMIPGHDSVPILITLAIKYLSDCPSALQHLTEENMELKKLKTQLGEPLKWNDYLSLPFTQNVISETLRMGNIITGVMRKAMKDIEIKGHLIPKGWCVLIYFRSVHLDENHFESPYNFNPWRWQNKDSNSSNFTPFGGGLRLCPGLDLARLEASIFLHHFVTEFRWVAEEDKIINFPTVRMKKGMAVWVKKREDN | 431 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 1628527 | 1634723 | + | Maker00023617 | Lcy13g0159 | 650464 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy13g0159 | 431 | PRINTS | E-class P450 group I signature | 68 | 87 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0159 | 431 | PRINTS | E-class P450 group I signature | 379 | 402 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0159 | 431 | PRINTS | E-class P450 group I signature | 337 | 361 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0159 | 431 | PRINTS | E-class P450 group I signature | 297 | 315 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0159 | 431 | PRINTS | E-class P450 group I signature | 369 | 379 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0159 | 431 | Pfam | Cytochrome P450 | 153 | 409 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0159 | 431 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 372 | 381 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy13g0159 | 431 | CDD | CYP90-like | 67 | 421 | - | - | |
| Lcy13g0159 | 431 | SUPERFAMILY | Cytochrome P450 | 30 | 428 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy13g0159 | 431 | PANTHER | CYTOCHROME P450 26 | 35 | 179 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER) | |
| Lcy13g0159 | 431 | Gene3D | Cytochrome P450 | 27 | 428 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g0159 | Lcy-Chr13:1628527 | Lcy7g0979 | Lcy-Chr7:10142468 | 3.60E-110 | dispersed | |
| Lcy1g0665 | Lcy-Chr1:5707684 | Lcy13g0159 | Lcy-Chr13:1628527 | 4.63E-115 | transposed | |
| Lcy5g2301 | Lcy-Chr5:45958805 | Lcy13g0159 | Lcy-Chr13:1628527 | 1.60E-49 | transposed | |
| Lcy11g0164 | Lcy-Chr11:1797533 | Lcy13g0159 | Lcy-Chr13:1628527 | 4.68E-25 | wgd | |
| Lcy13g0159 | Lcy-Chr13:1628527 | Lcy3g2208 | Lcy-Chr3:48938655 | 3.46E-176 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy13g0159 | K12638 | - | csv:101212581 | 658.292 |