Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0159 ATGGATTCTTTCTGGTTTTTTGTGCAGCTCATCACAGCTGCAGCTTTCATAATATCTTCCACAATCATAATCCTCAAAACCTTCATCTCCTCCCCTCCTTCCCTACCTTCCGGCTCCCTCGGCCTCCCCGTCGTCGGCGAAACCCTCCGCTTCGTCGCCTCCGCCTACTCTCCCCACCCCGAGACCTTCATGGACATACGTCGCCGTCGGTATGGGAATGTTTTCAAGTCCCATATATTTGGAAGTCCAACAATTGTTTCAACTGATGCTGAAGTGAGTAGGTTTATTCTACAAAGTGATGCAAAGGCTTTTGTCCCATCTTATCCAAAATCTTTGACAGAATTGATGGGGAAGTCTTCTATTTTGCTCATCAATGGCACTTTCCATAGGAAAATTCATGGCCTCATTGGAGCTTTCTTCAAATCATCTCATCTCAAAGCTCAATTAACCATAGACATGCAAAAATATCTTCAAAATTCCATCTCTATTTGGAGTTCTTCTCAACACAATCCTATCCACATACAAGATGAAGCCAAAAATGCTAAAAGGAAAATGGTTGGATTTGTGCAAGAAATGATACAATCTAGAAGAAAGAAGATGAGAGAAAATTTGAAAAATAATATAGTTCTTCCAAAGGATGTTGTGGATGTTTTGTTGAATGATGGAAGCCAACAAGTTACAGATGAACTGATAGCAGAAAATATGATTGATATGATGATTCCAGGCCATGATTCAGTCCCAATCCTCATAACTTTGGCCATAAAATACCTTTCTGATTGCCCATCTGCCCTTCAACATTTGACGGAAGAAAACATGGAGTTGAAAAAACTGAAAACTCAGCTTGGAGAGCCATTGAAATGGAATGATTACTTGTCATTACCATTTACACAAAATGTCATATCAGAGACATTAAGGATGGGAAACATTATAACAGGAGTGATGAGAAAGGCCATGAAAGACATTGAAATAAAAGGGCATTTGATACCTAAAGGATGGTGTGTCCTTATATATTTTAGGTCAGTTCATCTTGATGAGAACCACTTTGAAAGCCCTTACAATTTCAATCCATGGAGGTGGCAAAATAAAGACTCAAACAGCTCTAATTTCACTCCTTTTGGAGGGGGATTAAGATTGTGCCCTGGACTTGACTTGGCTAGATTGGAAGCTTCCATTTTCTTACACCATTTTGTCACTGAATTCAGGTGGGTGGCTGAGGAAGACAAGATTATCAACTTCCCAACAGTAAGAATGAAGAAAGGAATGGCAGTTTGGGTAAAGAAGAGAGAAGATAATTAA 1296 39.74 MDSFWFFVQLITAAAFIISSTIIILKTFISSPPSLPSGSLGLPVVGETLRFVASAYSPHPETFMDIRRRRYGNVFKSHIFGSPTIVSTDAEVSRFILQSDAKAFVPSYPKSLTELMGKSSILLINGTFHRKIHGLIGAFFKSSHLKAQLTIDMQKYLQNSISIWSSSQHNPIHIQDEAKNAKRKMVGFVQEMIQSRRKKMRENLKNNIVLPKDVVDVLLNDGSQQVTDELIAENMIDMMIPGHDSVPILITLAIKYLSDCPSALQHLTEENMELKKLKTQLGEPLKWNDYLSLPFTQNVISETLRMGNIITGVMRKAMKDIEIKGHLIPKGWCVLIYFRSVHLDENHFESPYNFNPWRWQNKDSNSSNFTPFGGGLRLCPGLDLARLEASIFLHHFVTEFRWVAEEDKIINFPTVRMKKGMAVWVKKREDN 431
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 1628527 1634723 + Maker00023617 Lcy13g0159 650464
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0159 431 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g0159 431 PRINTS E-class P450 group I signature 379 402 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g0159 431 PRINTS E-class P450 group I signature 337 361 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g0159 431 PRINTS E-class P450 group I signature 297 315 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g0159 431 PRINTS E-class P450 group I signature 369 379 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g0159 431 Pfam Cytochrome P450 153 409 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g0159 431 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 372 381 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy13g0159 431 CDD CYP90-like 67 421 - -
Lcy13g0159 431 SUPERFAMILY Cytochrome P450 30 428 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy13g0159 431 PANTHER CYTOCHROME P450 26 35 179 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER)
Lcy13g0159 431 Gene3D Cytochrome P450 27 428 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0159 Lcy-Chr13:1628527 Lcy7g0979 Lcy-Chr7:10142468 3.60E-110 dispersed
Lcy1g0665 Lcy-Chr1:5707684 Lcy13g0159 Lcy-Chr13:1628527 4.63E-115 transposed
Lcy5g2301 Lcy-Chr5:45958805 Lcy13g0159 Lcy-Chr13:1628527 1.60E-49 transposed
Lcy11g0164 Lcy-Chr11:1797533 Lcy13g0159 Lcy-Chr13:1628527 4.68E-25 wgd
Lcy13g0159 Lcy-Chr13:1628527 Lcy3g2208 Lcy-Chr3:48938655 3.46E-176 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0159 K12638 - csv:101212581 658.292