Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0160 ATGGCAATGGAAGGAAAGCATAAGTTCTTCCATGGCACGCTCGAAGTTACTGTCTTCCATGCAACAGCATACACGCCACCGTCGCCTCTCGATTGCTTATTTGCTGGAGGAAAGCGTAGCTATGTGACCATCAAGATAGACAACAAAGAGGTTGCCCAGACGAGCCATGAATACGACCGTGTTTGGAACCAGACATTCCGAGTTCTATGTGCATATCCATTGACTTCTACCGTCGCCATTACAATGAAAACATCTCGTTCTGTCTTAGGTAGATTCCAGATCCAAGCCCAACAGATTTTGAAAGAAGCGAGTTTTATCAATGGTTTCTTTCCACTTCTTATGGAAAATGGGAAGCCGAGTCCAGAGCTCAGACTTCGATTCATGCTATGGTTTAAACCGGCAGTATATGAATTAAGTTGGAAAAAGATGCTGGGAAATGGAGAATACAAGGGGCTGAGAAATGCAACATTTCCTCTAAGGTCCAACTGTCATGTGACTCTATATCAAGATGCTCACCACGTCCCTACTTTTCGACCTCCCTTTCATGGTTCGAACGCACCAAGAAGGCTATGGGAAGATGTATACAAGGCCATAGATAATGCAAAGCATTTGGTTTACATTGCAGGCTGGTCCTTCAATCCAAAGATGGTGCTGGTAAGGGATTCTCAGACTGATATACCCTATGCTTTAGGAGTAAAGCTAGGTGAGCTGTTGAAGCAAAAGGCAGAGGAGGGAGTAGCCGTGAGACTACTGATTTGGGATGATGAAACATCCCTTCCCATCATCAAGAATGCTGGGATAATGAAAACACACGATGAAGATGCTCGGGCATATTTCTTGCACTCGAAAGTTATATGTAGGTTGTGCCCCAAATTACATCCTATGTCCCCTCCAATTTTCTCTCATCATCAGAAAACCATAATCGTAGATGCTCAAACTCACATCAATGCACGAAACAGGGAGATTATGAGTTTCATTGGGGGTTTGGATCTTTGTGATGGCCGCTACGACACAGAACAACATTCGTTGTTCCATACTTTGAATACAGAATCCCACTGCTATGATTTCTACCAGACGAGTATATCAGGTGCCAAGCTTCAAAAAGGAGGGCCAAGAGAGCCATGGCATGATGTTCACGCTTGTGTAACAGGTGAAGCTGCTTGGGACATATTAACAAACTTCGAGCAACGATGGACCAAGCAATCAGATGCTTCGTTGCTAGTCCCAACAAGCATCTTATTAAAACTGATGCCCCAGCTCGAATCAAACACAAGCACACAAAAGGATTGGCATGTGCAAGTATTTCGATCTATTGATCACTTATCTGCCAGCCAAGTGTTCAGAAACTTGACTGTTGAACGAACCATCCATGAAGCTTACGTTGAAGCTATCAGGCGAGCCGAGAGATTTATTTACATCGAAAACCAATATTTCATAGGAGGGTGCCACTTGTGGGACAAAGATCAACACTGTGGATGCACGAATTTGATACCAATCGAGATTGCACTCAAGGTGGCTAATAAGATCAAGGCAAGGGAGAGGTTTGCAGTTTACATAGTGATTCCAATGTGGCCAGAAGGACCACCAGAGAGTGAATCAGTTGAGGATATGCTACATTGGACAAGGCAGACAATGAAAATGATGTATAGACTGATTGGAGAAGCAATCCAAGAAACTGGAGAGAAGGCCCATCCAAGAGACTACTTGAATTTCTTCTGCCTTGCAAACAGAGAAGAAGAGACAAAATGGGACTTTGTTCCCCCACACAGTCCCCAACATGCAACACAGTACTGGAATGCCCAACAACATAGGAGGTTCATGGTCTATGTCCATTCCAAGGTCATGATAGTGGACGATTCGTACATTCTGATCGGATCCGCCAACGTAAACCAGAGATCCATGGACGGAGAGCGAGATACAGAGATAGCAATCGGATGCTACCAATTAGAAAACGACGGAGAAGAGTTACCAAATGGAAGAGACATTTCAACATTCCGATTGTCGCTTTGGTACGAACATACTCAACGATTCGAAGATCTGTTCTTACAGCCCGAAAACTTGCAATGCGTTCAAAGGGTTCGTTCAATAGCGGATGAATCATGGGAAATTTACAGTGGAGATGAAATTGCAGACATGAAGGGAGTTCATCTCGTAACGTACCCGGTGAAGGTTAAACAGGACGGCTCGATCGAGGATTTGGAAGAAAATGGAGGCCATTTTCCTGATACGAAATGCCCAATTAAAGGAAGAAGATCGATGCTCTTGCCGCCGATCTTCACGACTTAG 2286 44.23 MAMEGKHKFFHGTLEVTVFHATAYTPPSPLDCLFAGGKRSYVTIKIDNKEVAQTSHEYDRVWNQTFRVLCAYPLTSTVAITMKTSRSVLGRFQIQAQQILKEASFINGFFPLLMENGKPSPELRLRFMLWFKPAVYELSWKKMLGNGEYKGLRNATFPLRSNCHVTLYQDAHHVPTFRPPFHGSNAPRRLWEDVYKAIDNAKHLVYIAGWSFNPKMVLVRDSQTDIPYALGVKLGELLKQKAEEGVAVRLLIWDDETSLPIIKNAGIMKTHDEDARAYFLHSKVICRLCPKLHPMSPPIFSHHQKTIIVDAQTHINARNREIMSFIGGLDLCDGRYDTEQHSLFHTLNTESHCYDFYQTSISGAKLQKGGPREPWHDVHACVTGEAAWDILTNFEQRWTKQSDASLLVPTSILLKLMPQLESNTSTQKDWHVQVFRSIDHLSASQVFRNLTVERTIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDQHCGCTNLIPIEIALKVANKIKARERFAVYIVIPMWPEGPPESESVEDMLHWTRQTMKMMYRLIGEAIQETGEKAHPRDYLNFFCLANREEETKWDFVPPHSPQHATQYWNAQQHRRFMVYVHSKVMIVDDSYILIGSANVNQRSMDGERDTEIAIGCYQLENDGEELPNGRDISTFRLSLWYEHTQRFEDLFLQPENLQCVQRVRSIADESWEIYSGDEIADMKGVHLVTYPVKVKQDGSIEDLEENGGHFPDTKCPIKGRRSMLLPPIFTT 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1637034 1639897 - Maker00023566 Lcy13g0160 650465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0160 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 298 335 IPR001736 GO:0003824(InterPro)
Lcy13g0160 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824(InterPro)
Lcy13g0160 761 Gene3D Endonuclease Chain A 173 430 - -
Lcy13g0160 761 SMART pld_4 606 633 IPR001736 GO:0003824(InterPro)
Lcy13g0160 761 SMART pld_4 300 335 IPR001736 GO:0003824(InterPro)
Lcy13g0160 761 SUPERFAMILY Phospholipase D/nuclease 423 689 - -
Lcy13g0160 761 PANTHER PHOSPHOLIPASE D 38 744 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lcy13g0160 761 PIRSF PLD_plant 2 761 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Lcy13g0160 761 Pfam Phospholipase D Active site motif 609 633 IPR001736 GO:0003824(InterPro)
Lcy13g0160 761 Pfam Phospholipase D C terminal 678 750 IPR024632 -
Lcy13g0160 761 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 129 IPR035892 -
Lcy13g0160 761 SUPERFAMILY Phospholipase D/nuclease 146 409 - -
Lcy13g0160 761 Gene3D Endonuclease Chain A 445 652 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0160 Lcy-Chr13:1637034 Lcy3g2047 Lcy-Chr3:47476746 5.40E-204 dispersed
Lcy13g0160 Lcy-Chr13:1637034 Lcy12g0595 Lcy-Chr12:7336357 4.64E-205 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0160 K01115 - csv:101206396 1485.7