Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0161 ATGAGTCGGGAGCAGAAGCGGGGAAAGCAGGACAAAGGTTCTGATGATGTCCAGAAGGTGATTGTTGCAGTGAAGGCTTCCAAAGAAATTCCTAAAACTGCATTGGTTTGGGCGTTGACTCATGTTGTTCAAATTGGAGATTGCATAACTTTGCTGGTTGTTGTCCCTTCTCAAAGCTCTGGAAGAAAATTTTGGGGTTTTCCGAGATTTGCCGGGGACTGTGCAAGTGGTCACAAGAAAGCTCACTCTGGAACAAGCTCGGAGCAGAAATGTGATATTACCGATTCCTGCTCGCAGATGATCCTTCAGCTTCATGATGTTTATGATCCAAATAAGATAAATGTGAAAATTAAAATTGTTTCGGGGTCGCCTAGTGGGGCTGTAGCTGCTGAGGCTAAGAGAGCTCAAGCTAGCTGGGTTGTATTAGACAAACAGCTCAAACACGAGGAGAAATGTTGCATGGAAGAGTTACAGTGCAACATCGTGGTAATGAAGCGATCTCAACCGAAAGTTCTTCGCTTGAACCTGGTTGGGTCTCCAAAGAAAGAACCAGAAGTGCCCTCTCCCTTACCTTCTGATATAGATGAAGGGTCTGAAAGCCACCAGAAAGAAAATAATGATCCTCTGGATTTTATTCGGGGACCAGTTGTGACCCCTAATAGCAGTCCAGAGTTGGGCACACCTTTTACCACTACCGAAGCTGGAACATCATCGGTGTCAAGCTCAGATCCTGGAACTTCACCATTTTTCAACTCTGAAATAAATGGAGACACAAAGAAAGAGGAATTGTTTGTTATCAAGGAAAATAAAGAACTTGATGCTGCTAGTTCAGACTCAGATATTGATAATTTATCTGTATCTTCGGGGAGCTTAAGATTCCAACCATGGATGACTGAATTTCTAAGTTCTCATCTTCAATCCTCACAACTCATAAGTGGAAGGTCGCAGAGGTGTGATGATAGGAATCAAGTGTCAACAAGAAAATCTTTTCTACCAAAGTCATCAAAACTTGATAGAGAGTCCAGTATCGGAATGTCAAGCCATAGAAGTGACAATGACTTCCATGGAGACGTACGAGATGCTGTTTCATTATCAAGGAACTCGCCACCAGGCCCTCCTCCATTGTGTTCAATATGTCAACACAAGGCACCAGTTTTTGGAAAGCCTCCAAGGTGGTTCAGCTATGCTGAGCTGGAGCTTGCTACGGGTGGGTTTTCACAAGCCAACTTTTTGGCAGAAGGAGGATATGGATCTGTACACAGAGGGGTACTCCCGGACGGACAGGTAGTCGCTGTCAAGCAGCACAAACTAGCTAGTTCTCAGGGAGACCTTGAATTTTGTTCTGAAGTCGAAGTTCTTAGCTGTGCACAGCATCGAAACGTTGTTATGTTGATTGGCTTTTGTATAGAGGAGAAAAGAAGGTTGTTGGTTTATGAATACATCTGCAATGGCTCATTGGATTCTCATTTATATGGACGCCAACAAGAGCCGTTAGAATGGTCTGCACGGCAAAAAATTGCAGTGGGAGCTGCAAGGGGGCTACGATATCTCCACGAAGAATGTAGAGTGGGTTGCATTGTTCACCGGGATATGCGGCCAAACAACATTCTTATCACCCATGATTTTGAACCGCTGGTTGGAGATTTTGGCCTTGCGAGGTGGCAGCCCGACGGAGATACCGGTGTTGAGACAAGAGTTATTGGAACCTTTGGGTATTTGGCTCCAGAGTATGCTCAAAGTGGCCAAATCACAGAAAAAGCTGATGTTTATTCCTTTGGCGTGGTACTGGTTGAGCTAATCACCGGAAGAAAAGCCGTGGACCTTAGTCGGCCGAAAGGTCAACAGTGTCTCACCGAATGGGCACGCCCCCTGTTGGATGAACTTCTCATTGATGAACTGATTGATCCAAGGTTGGGAAATAGCTTTGCAGAGCATGAAGTGTACTGCATGCTGCACGCCGCATCGTTATGCATCCGAAGAGATCCTAACGCAAGGCCTCGTATGTCACAGGTTACTGGGAAAGGGACAAGACAAGGAGGACTTCAAGTGGAAGTGATTTGTAAAGTGGCTCAGCATTCTTAG 2082 45.29 MSREQKRGKQDKGSDDVQKVIVAVKASKEIPKTALVWALTHVVQIGDCITLLVVVPSQSSGRKFWGFPRFAGDCASGHKKAHSGTSSEQKCDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPSGAVAAEAKRAQASWVVLDKQLKHEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSPKKEPEVPSPLPSDIDEGSESHQKENNDPLDFIRGPVVTPNSSPELGTPFTTTEAGTSSVSSSDPGTSPFFNSEINGDTKKEELFVIKENKELDAASSDSDIDNLSVSSGSLRFQPWMTEFLSSHLQSSQLISGRSQRCDDRNQVSTRKSFLPKSSKLDRESSIGMSSHRSDNDFHGDVRDAVSLSRNSPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGYGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEEKRRLLVYEYICNGSLDSHLYGRQQEPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLSRPKGQQCLTEWARPLLDELLIDELIDPRLGNSFAEHEVYCMLHAASLCIRRDPNARPRMSQVTGKGTRQGGLQVEVICKVAQHS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1651314 1657110 - Maker00023519 Lcy13g0161 650466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0161 693 Pfam Protein kinase domain 409 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0161 693 FunFam Dual-specific kinase DSK1-like 11 165 - -
Lcy13g0161 693 CDD STKc_IRAK 411 671 - -
Lcy13g0161 693 MobiDBLite consensus disorder prediction 342 357 - -
Lcy13g0161 693 MobiDBLite consensus disorder prediction 176 254 - -
Lcy13g0161 693 Gene3D HUPs 3 151 IPR014729 -
Lcy13g0161 693 Gene3D Transferase(Phosphotransferase) domain 1 481 679 - -
Lcy13g0161 693 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 377 480 - -
Lcy13g0161 693 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 481 681 - -
Lcy13g0161 693 MobiDBLite consensus disorder prediction 220 254 - -
Lcy13g0161 693 ProSiteProfiles Protein kinase domain profile. 405 693 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0161 693 MobiDBLite consensus disorder prediction 312 357 - -
Lcy13g0161 693 PANTHER OS01G0750732 PROTEIN 136 671 IPR050885 -
Lcy13g0161 693 Gene3D Phosphorylase Kinase; domain 1 377 480 - -
Lcy13g0161 693 SUPERFAMILY Protein kinase-like (PK-like) 389 673 IPR011009 -
Lcy13g0161 693 ProSitePatterns Tyrosine protein kinases specific active-site signature. 526 538 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0161 Lcy-Chr13:1651314 Lcy7g0396 Lcy-Chr7:3370972 5.78E-92 dispersed
Lcy10g1298 Lcy-Chr10:35852863 Lcy13g0161 Lcy-Chr13:1651314 8.15E-99 transposed
Lcy2g0904 Lcy-Chr2:8293220 Lcy13g0161 Lcy-Chr13:1651314 6.03E-250 transposed
Lcy9g2164 Lcy-Chr9:46332711 Lcy13g0161 Lcy-Chr13:1651314 1.75E-184 transposed
Lcy11g0178 Lcy-Chr11:2042856 Lcy13g0161 Lcy-Chr13:1651314 1.41E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65546 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0161 - - - 0.0