Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0164 ATGGAAAGCCCCACTGTCTTCTCAATCTTCATCTTCCTGTGTATTGGGCTTCGAGCTTTCTCTGCCATGGCGGATGACGAGGCAGTTACAGTGAAGGTCGGGGTCGTTCTTGACTCCGATTCTTCGATTGGGAAAATGGGGTTGAGTTGTATGGAAATGGCTCTCTCTGATTTCTATGGATTTCATGGAAATTACAAGACCCGTTTGGCTCTGTTCCCGCAAAACTCCATGGGAGACGTTGTTGAAGCTACTGCTGCAGCTTTAGAGTTAATCAAGAATGAAGAAGTGGAAGCCATTGTTGGGCCACAGAGTTCAACTCAAGCAACTTTCATGGCGGATCTCGGGAAAAAATCTCAGGTACCCATAATTTCATTTTCTGCAACGAGCCCATCTCTGGATTCTCATCGGAACCCTTACTTTTTCCGAGCGACCCAAATCGATTCATCGCAAGCGAAACCCATCGCCGCCATTTTTAAAGCCTTCGATTGGAGACAGGTGGTGCTCATTCATACAGATGATGGCGAGGGGATTTTGCCCCCCATGAGAGATGCTCTGCTAGAGGTTAACACTCGAGTGGCTTACGAGACTGCGATTCCTCAATCTGCTTCTGATGATAGAATCGCCAAAGAGCTTTACAAATTGATGACGATGCAAACGAGAGTTTTCGTTGTTCATATGTTACCAGAGCTTGGTTCTCGCGTTTTCGCCATGGCTAAGGAGATTGGAATGATGGGGTCGGGTTATGTTTGGATTATAACTGATGGGATGAGTAATTTTCTCTCTCGGATTGATGATTCCGCCATGGAAGCTATGAGTGGAGCTTTGGGGGTAAGAACTTACATTCCCAGAACAGAAAAACTTGAAGATTTTCAGATGCGGTGGAGAAGGAAATTTGAAAAGGAAGTTTCTGAACTGAATATATTTGGGTTGCGAGCTTATGATGCAACTGTTGCTCTAGCCAAGGCCGTGGAGAGAGTTGGAACCACAGAGTTCATCTTAAAGAAGCCAAACGTTTCTGGCAAATCTACTGATCTTGACAATCTTGGGGTCTCTCGAAATGGTCCAAGGCTGTCTGAGGCATTGTCTAAAACACATTTCAAAGGGCTTGCAGGAGACTTCAGAATGGTTGAAGGGCAATTGAAATCATCAACTTATGAGATTATAAATATCAATCATGAAAAGAATATTACAGTGGTTGGATTCTGGACACCAGAAAATGGGCTGACACAAACCTTAGACTCCATGAAAATGAGCTCAAACACTTCTGTTGCAAATCTTAGCCACATCATATGGCCAGGAGATGATTCCAATTCTTTCAATCTCCCAAAAGGTTGGGTCACTCCAACAAATGAAAAGAAGCTGAAATTTGGAATTCCAGTTAAATCTGGGGTCAGTAAGTTTATTAGAGAAATAAGGGACCCAGTGACTAACAGGACAAAGAAAACAGGGTACAGCATCGATATCTTTGAAGCTGTAATCAAAGCACTACCGTATGCTGTTTCATACGAATACATTCGGTTTGAAAATGATAAAGGAGTAATGGCTGGTAGCTACGAGGACATGGTCAAGCAAGTATACTTAGGGGTATACGATGCGGTCGTGGGAGATGTGTCCATCAGAGAAAGCAGATCCCAATATGTAGACTTCACATTGCCATACTCTGAAGCTAGCGTGTCAATGGTTGTACTATTTCGAGATAACAAGAACAAAGCTTGGCTTTTCTTGAAGCCTTTGTCATTGAACCTTTGGTTGACAAGTGCTTTCTTTTTTGCCTTCATTGGACTGGTCATCTGGATTCTCGAGCACAGAATCAATGAAGATTTTAGAGGTCCTCCCTCGCACGAAATCGGGACGAGCTTCTGGTTTGCTTTCTCAACTATGGTGTATGCTCAAAGGGAGAAGGTGGAAAGCAACTTGGCTAGATTTGTGGTAATAGTATGGCTATTTGTGGTGTTCATATTGACTCAGAGTTACACGGCCAGTCTTACGTCGCTACTGACGGTTCAAAAACTGGAGCCAACTTTTACTGATATGAACCAGCTGAAGGAGCAGAAGGTGAATGTTGGATACCCAAATGGTTCTTTTGTTCAAGAATTGCTGATAGCTCAAGGTTTTGATCGATCCAAGCTTGTAATCTATAACAGTATGGCACATTGTGGATCATTGTTCTTAAATGGGACCATAGCTGCTGCCTTTGATGAAATCCCTTATCTCAAGGTTCTTACCACAACATATTGCACCAATTGCACCATCGTCGGTCCCACAATGAAATCGAACGGCTTTGGCTATGTCTTCCCCAAGGGGTCTCAACTCGGACGCGATGTTTCGAAGGGAATACTTGATGTAATGGAGAGTGGAGTTCTGCAAGAGATTGAAAACAAATGGTTTAAAGGCAACATCAGCAGCCCTGACCCCAATAGCTTGATTTCCACCACACTTGGGCTTGAAAGCTTTTGGGGGTTGTTTCTTGTTACAGGAGCTGTATCTTCATCTGCACTCATTGTAGCTCTGGCCAGTTTTCTCCATGGACACAGACATGTCTTGAAGCTTTCCACTCTCTCAATGTGGAAAAGGTTTCTTCTTCTTTTGAAAATTTTCGACGAGAAAGACCTGACTTCACCGGCGTTGAGAAAGAATCGTCGAGACGAAAGCCCGGAAGTTAAAGATATCAGATTTGAACCTCATCCCAGCCCTTCCTGTGATTCAAGCTACAGAAATGGAGGACTTTCGCCTTGTAACTTTGATGATTTCAATGGTGGTCAGATTGCAACTCCTCAACTATCACCAAGCAGGTAA 2796 43.6 MESPTVFSIFIFLCIGLRAFSAMADDEAVTVKVGVVLDSDSSIGKMGLSCMEMALSDFYGFHGNYKTRLALFPQNSMGDVVEATAAALELIKNEEVEAIVGPQSSTQATFMADLGKKSQVPIISFSATSPSLDSHRNPYFFRATQIDSSQAKPIAAIFKAFDWRQVVLIHTDDGEGILPPMRDALLEVNTRVAYETAIPQSASDDRIAKELYKLMTMQTRVFVVHMLPELGSRVFAMAKEIGMMGSGYVWIITDGMSNFLSRIDDSAMEAMSGALGVRTYIPRTEKLEDFQMRWRRKFEKEVSELNIFGLRAYDATVALAKAVERVGTTEFILKKPNVSGKSTDLDNLGVSRNGPRLSEALSKTHFKGLAGDFRMVEGQLKSSTYEIININHEKNITVVGFWTPENGLTQTLDSMKMSSNTSVANLSHIIWPGDDSNSFNLPKGWVTPTNEKKLKFGIPVKSGVSKFIREIRDPVTNRTKKTGYSIDIFEAVIKALPYAVSYEYIRFENDKGVMAGSYEDMVKQVYLGVYDAVVGDVSIRESRSQYVDFTLPYSEASVSMVVLFRDNKNKAWLFLKPLSLNLWLTSAFFFAFIGLVIWILEHRINEDFRGPPSHEIGTSFWFAFSTMVYAQREKVESNLARFVVIVWLFVVFILTQSYTASLTSLLTVQKLEPTFTDMNQLKEQKVNVGYPNGSFVQELLIAQGFDRSKLVIYNSMAHCGSLFLNGTIAAAFDEIPYLKVLTTTYCTNCTIVGPTMKSNGFGYVFPKGSQLGRDVSKGILDVMESGVLQEIENKWFKGNISSPDPNSLISTTLGLESFWGLFLVTGAVSSSALIVALASFLHGHRHVLKLSTLSMWKRFLLLLKIFDEKDLTSPALRKNRRDESPEVKDIRFEPHPSPSCDSSYRNGGLSPCNFDDFNGGQIATPQLSPSR 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1705161 1709779 - Maker00023593 Lcy13g0164 650469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0164 931 SUPERFAMILY Voltage-gated potassium channels 578 666 - -
Lcy13g0164 931 MobiDBLite consensus disorder prediction 877 904 - -
Lcy13g0164 931 Pfam Bacterial extracellular solute-binding proteins, family 3 479 579 IPR001638 -
Lcy13g0164 931 FunFam Glutamate receptor 571 701 - -
Lcy13g0164 931 CDD PBP1_GABAb_receptor_plant 32 412 IPR044440 -
Lcy13g0164 931 SUPERFAMILY Periplasmic binding protein-like II 441 799 - -
Lcy13g0164 931 Gene3D - 571 699 - -
Lcy13g0164 931 FunFam Glutamate receptor 150 307 - -
Lcy13g0164 931 Gene3D - 454 570 - -
Lcy13g0164 931 CDD GluR_Plant 452 796 - -
Lcy13g0164 931 SMART GluR_14 453 798 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy13g0164 931 Gene3D - 314 453 - -
Lcy13g0164 931 Gene3D - 148 313 - -
Lcy13g0164 931 PANTHER OS06G0188250 PROTEIN 11 481 IPR015683 -
Lcy13g0164 931 Pfam Receptor family ligand binding region 49 392 IPR001828 -
Lcy13g0164 931 MobiDBLite consensus disorder prediction 877 895 - -
Lcy13g0164 931 Pfam Ligand-gated ion channel 798 827 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy13g0164 931 FunFam Glutamate receptor 453 572 - -
Lcy13g0164 931 Gene3D - 725 803 - -
Lcy13g0164 931 SUPERFAMILY Periplasmic binding protein-like I 30 433 IPR028082 -
Lcy13g0164 931 PIRSF IGluLR_plant 2 904 IPR017103 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0164 Lcy-Chr13:1705161 Lcy13g2238 Lcy-Chr13:41285024 1.50E-281 dispersed
Lcy13g0164 Lcy-Chr13:1705161 Lcy13g1870 Lcy-Chr13:37571813 1.76E-205 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0164 K05387 - csv:101213301 1565.82