Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0186 ATGTTGAAACGAAATCTCCCTTTTGCCCTTATCAGACCTTGTCTTTCCCGCGAAAACGAACGGCCATCTTTTCAAACCATTGAAAATCTCAGTCGCCATCTTCGAAACTGCAACGATTTGATTTCTTCAACCTCCGCTCACTCCATAGCCCTAAAGCTTGGATTCTTAAAACAAACTGTCACCGTCAACCATCTCATCAATTGCTATGTCAGATTCCGCAAAGTTGCAATTGCACACCAACTGTTCGACGAAATGCCTGCTCCAAATGTTGTGTCATGGACCTCACTCATGGTTGGTTATGTCGACGATGGTCGCCCGAGTATCGCTCTTTCGCTCTTCGGGGCAATGTCGAGAAGTTCGGTTGTACCGAACGACTTCACTTTAGCTACTGCAATCAAGGCCTGTTCGACCCTTTCGAATTTAAGAGATGGCGAAAAGTTCCATGCCTGTGTTGAGATTTTTGGCTATGGAGGTAATGTTGTGGTGTGTTCTTCGCTTATTGATATGTATGGGAAGTGCAATGATGTTATTAGAGCTAGGAGAGTCTTTGATTCCATGTCTTGTAAGAATATTGTTTCTTGGAGTTCAATGATTGCTGCTTATGCTCAGAATGCACACGGCGACGATGCGTTAGAAGTATTTAGGGAATTCAGTAGTTTGAGCTGTGAACATCCAAATCATTTCATGTTAGCTAGTGTGATTAGTGCTTGTGCAAGCTTGGGCAGGCTGGTTTCGGGTAAAGTCGTGCACGGTGCAGCGATTCGTCTCGGCTTTGATTCAAACGACGTAGTTGCGAGCGTGTTGGTTGATATGTATGCTAAATGTGGGAGTCTTGAGTATTCTGATAAGGTCTTTAATAGAATTTCAAACCCCTCTGTTATTCCCTATACTTCAATGATTGTGAGCTCAGCAAAGTATGGACTTGGGAGACAGTCCCTTCAACTCTTTGAAGAAATGGTGAGAAAAGGATTAAAACCTAACCATGTCACTTTTGTTGGTGTCTTGCATGCTTGTAGCCATTCAGGGCTTCCTGATGAGGGCCTTGATTATCTGACTTCCATGTATGAGAAACATGGGATAATGCCTGAGACTAAGCATTATACATGTGTTGTCGACATGCTTGCTCGAGCCGGGCAGCTAGATAAAGCTTACCAACTAGCGAAATCGATGGAGGTAGCGCCAGACGACGAGGCATTGTTGTGGGGAGCATTGCTTTCAGCTAGTAGGTTTCATGGCAGGGTAGACATTGCAGCTGAAGCTTGTCAGCGACTGGTCGATTCCAATCGACAAGTCGCTGGTGCATACGTCACTTTGTCAAATGCCTACGCATCGGCTGGGGATATGGAAAAGGCTCACAGGCTTCGGGTTGAGATGAAGCATACTGGTGTTCACAAAGAACCAGGCTGCAGTTGGCTCGAGATAAAAGATTCAAGTTTTGTATTCTACGCCGGGGATGTAACGTCGTGCCCACGAAGCGATGAAGTGTTGCGTTTACTAAGAGAGTTGGAATGCAAAATGAAGGATCGAGGTCGAGGTTATGCACGAGGAAGCAAAGGGTTGGTGTTTGTTGATATAGAAGAAGAGGCAGAGGAGGAAAAAGTTTGGTTGCACAGTGAGAGATTGGCATTGGGATTTGGTTTGATTAGCATCCCTAAAGGACTCACCATAAGAATAATGAAGAACTTGAGAATGTGCAGTGATTGTCATGAGGCTTTCAAGCTTATAAGTGAGATTGTGGAGAGAGACTTTATAGTTAGAGATATCAACAGATTTCATCACTTCAAAAGTGGTGGTTGTACTTGCAATGATTTCTGGTAA 1818 44.28 MLKRNLPFALIRPCLSRENERPSFQTIENLSRHLRNCNDLISSTSAHSIALKLGFLKQTVTVNHLINCYVRFRKVAIAHQLFDEMPAPNVVSWTSLMVGYVDDGRPSIALSLFGAMSRSSVVPNDFTLATAIKACSTLSNLRDGEKFHACVEIFGYGGNVVVCSSLIDMYGKCNDVIRARRVFDSMSCKNIVSWSSMIAAYAQNAHGDDALEVFREFSSLSCEHPNHFMLASVISACASLGRLVSGKVVHGAAIRLGFDSNDVVASVLVDMYAKCGSLEYSDKVFNRISNPSVIPYTSMIVSSAKYGLGRQSLQLFEEMVRKGLKPNHVTFVGVLHACSHSGLPDEGLDYLTSMYEKHGIMPETKHYTCVVDMLARAGQLDKAYQLAKSMEVAPDDEALLWGALLSASRFHGRVDIAAEACQRLVDSNRQVAGAYVTLSNAYASAGDMEKAHRLRVEMKHTGVHKEPGCSWLEIKDSSFVFYAGDVTSCPRSDEVLRLLRELECKMKDRGRGYARGSKGLVFVDIEEEAEEEKVWLHSERLALGFGLISIPKGLTIRIMKNLRMCSDCHEAFKLISEIVERDFIVRDINRFHHFKSGGCTCNDFW 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1927965 1929782 + Maker00023715 Lcy13g0186 650491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0186 605 Gene3D Tetratricopeptide repeat domain 11 145 IPR011990 GO:0005515(InterPro)
Lcy13g0186 605 Pfam PPR repeat family 88 136 IPR002885 -
Lcy13g0186 605 Pfam PPR repeat family 291 339 IPR002885 -
Lcy13g0186 605 Gene3D Tetratricopeptide repeat domain 290 540 IPR011990 GO:0005515(InterPro)
Lcy13g0186 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
Lcy13g0186 605 Gene3D Tetratricopeptide repeat domain 146 224 IPR011990 GO:0005515(InterPro)
Lcy13g0186 605 FunFam Pentatricopeptide repeat-containing protein 103 244 - -
Lcy13g0186 605 PANTHER OS07G0578800 PROTEIN-RELATED 224 490 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Lcy13g0186 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Lcy13g0186 605 Pfam PPR repeat 366 391 IPR002885 -
Lcy13g0186 605 Pfam PPR repeat 192 219 IPR002885 -
Lcy13g0186 605 Pfam PPR repeat 161 191 IPR002885 -
Lcy13g0186 605 Pfam PPR repeat 60 85 IPR002885 -
Lcy13g0186 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Lcy13g0186 605 Pfam E motif 412 473 IPR046848 -
Lcy13g0186 605 Pfam DYW family of nucleic acid deaminases 520 605 IPR032867 GO:0008270(InterPro)
Lcy13g0186 605 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 263 490 - -
Lcy13g0186 605 SUPERFAMILY TPR-like 371 453 IPR011990 GO:0005515(InterPro)
Lcy13g0186 605 NCBIfam pentatricopeptide repeat 192 226 IPR002885 -
Lcy13g0186 605 NCBIfam pentatricopeptide repeat 296 327 IPR002885 -
Lcy13g0186 605 NCBIfam pentatricopeptide repeat 161 192 IPR002885 -
Lcy13g0186 605 NCBIfam pentatricopeptide repeat 91 124 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0186 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0186 Lcy-Chr13:1927965 Lcy6g0360 Lcy-Chr6:3316916 4.13E-132 dispersed
Lcy13g0186 Lcy-Chr13:1927965 Lcy7g0746 Lcy-Chr7:7201731 2.98E-135 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g329 . Blo12g00020 . . Bpe04g01129 . . . Cmo08g01191 . . . . . . . . . . . . . . . Cla06g00491 . . . . . . . . . Cone4ag0156 . . Chy11g01486 . . . . . . . . . . . . Cma08g01218 . Car08g01091 . . Cpe17g00013 Bhi12g02081 . . . Hepe03g0114 . Lcy13g0186 . . . . . . . Lsi09g01416 . . Cme11g01993