Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0194 ATGATTCATATTATGCCTTTGATGTTGTTCCTTTGGCAGGTGAAGTTTAAAATTGCGTCGTGTTATTGTGCATTAAGTGACAATAGAGCTGCCCTTGTAGAGATGGAGGGAATTCCAAGTAAAGCAAGAAATTTGCAAATGAATCTTTTGATGGGAAAGCTTTATAGATATGCCAGACATAACCGTGCTGCTATTGCATACTACAAGGAGTGCTTAAGACATTGCCCTTATGTGTTTGAAGCTATTATAGCTTTAGCAGAACTTGGTGCTACGTCCAAAGATATCATTTCGTTGTTCCCTCAGACTCCAAATAGAAGTGGCAAAACTCCTTTTGATCACTTTGATTCCAATCGCTGGCTGCCACGCTATGTTGAGGCCCAGTGCTGCATTGCTTCAAATGATTACAAAGGTGGTTTGGAGCTGTTTTTGGATTTGTTGCAACGTTTTCCCAATAATATTCACCTGTTACTTGAAATTGCAAAGGTTGAAGCCATCATAGGAAAAAACGATGAGGCCATCATGAATTTTGAGAAGGCACGATCAATTGATCCATATCTTATAACATATATGGATGAATATGCAATGCTTCTCAAGATAAAGTCTGATTATTCAATGCTAAACAAGTTAGTCCATGACTTGTTAAATATTGATCCTACAAGACCAGAAGTTTTTGTGGCTTTGTCTGTATTGTGGGAAACGAAAGATGAGAGGGGAGCTTTGTCCTATGCTGAAAAGAGCATCCGAATTGATGAAAGGCATATAACGGGTTTCATTATGAAGGGAAACCTGTTATTAGCCATGAAGCAGCCAGAAGCAGCTGTTAGTGCTTTCAGAAATGCTCAAGAATTAAGACCTGATATTCGGTCATATCAAGGCTTGGTCCATTCTTATCTGGCTCTATCGAAAATAAAAGAGGCATTATATGCTGCCCGGGAGGCAATGAAAGCGATGCCTCAATCTGCAAAGGCTCTGAAATTAGTTGGAGATGTACATGCTAGTAACTCAGGTGGTAGAGAGAAGGCCAAGAAGTTTTATGAGTCAGCCCTTAGGCTGGAACCCGGTTACCTTGGAGCGGCGTTAGCTTTGGCAGAGCTCCATGTTATTGAAGGTCGAAATGGGGATGCTGTATCCTTACTGGAGAGGTATCTTAAGGACTGGGCTGATGATTCCCTTCACGTAAAACTAGCACAAGTATTTGCCGCCACAAATATGCTGCAAGAGGCTTTATCTCACTATCAAGCTGCATTAAGGATGAATCCCCAGAATGAAGCTGCCAAAAAAGGTCTAGAGCGCTTAGAGAAACAAATGAAGGGAGTAGATCCTGATGCACCTGAAGATGATGAAGACAATGAGGTCGATGATGCCGATGGAGACCAAGAAGAAACTGAACTTTTATGA 1398 41.2 MIHIMPLMLFLWQVKFKIASCYCALSDNRAALVEMEGIPSKARNLQMNLLMGKLYRYARHNRAAIAYYKECLRHCPYVFEAIIALAELGATSKDIISLFPQTPNRSGKTPFDHFDSNRWLPRYVEAQCCIASNDYKGGLELFLDLLQRFPNNIHLLLEIAKVEAIIGKNDEAIMNFEKARSIDPYLITYMDEYAMLLKIKSDYSMLNKLVHDLLNIDPTRPEVFVALSVLWETKDERGALSYAEKSIRIDERHITGFIMKGNLLLAMKQPEAAVSAFRNAQELRPDIRSYQGLVHSYLALSKIKEALYAAREAMKAMPQSAKALKLVGDVHASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYQAALRMNPQNEAAKKGLERLEKQMKGVDPDAPEDDEDNEVDDADGDQEETELL 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2028965 2036288 + Maker00023607 Lcy13g0194 650499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0194 465 PANTHER CELL DIVISION CYCLE 16,23,27 13 434 - GO:0005680(PANTHER)|GO:0016567(PANTHER)|GO:0045842(PANTHER)|GO:0051301(PANTHER)
Lcy13g0194 465 MobiDBLite consensus disorder prediction 442 465 - -
Lcy13g0194 465 MobiDBLite consensus disorder prediction 423 465 - -
Lcy13g0194 465 MobiDBLite consensus disorder prediction 424 441 - -
Lcy13g0194 465 Pfam Tetratricopeptide repeat 258 286 IPR019734 GO:0005515(InterPro)
Lcy13g0194 465 SUPERFAMILY TPR-like 229 425 IPR011990 GO:0005515(InterPro)
Lcy13g0194 465 Gene3D Tetratricopeptide repeat domain 12 434 IPR011990 GO:0005515(InterPro)
Lcy13g0194 465 ProSiteProfiles TPR repeat profile. 389 422 IPR019734 GO:0005515(InterPro)
Lcy13g0194 465 Pfam Tetratricopeptide repeat 339 391 - -
Lcy13g0194 465 SUPERFAMILY TPR-like 123 287 IPR011990 GO:0005515(InterPro)
Lcy13g0194 465 SMART tpr_5 153 186 IPR019734 GO:0005515(InterPro)
Lcy13g0194 465 SMART tpr_5 45 78 IPR019734 GO:0005515(InterPro)
Lcy13g0194 465 SMART tpr_5 119 152 IPR019734 GO:0005515(InterPro)
Lcy13g0194 465 SMART tpr_5 389 422 IPR019734 GO:0005515(InterPro)
Lcy13g0194 465 SMART tpr_5 254 287 IPR019734 GO:0005515(InterPro)
Lcy13g0194 465 SMART tpr_5 321 355 IPR019734 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0194 K03354 - - csv:101215365 834.713
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g345 . . . . . . . . Cmo08g01185 Cmo17g00301 . . . . . . . . . . . . . . Cla06g00496 Cam06g0533 Cec06g0533 Cco06g0537 Clacu06g0518 Cmu06g0520 Cre06g1290 . . . Cone4ag0164 . . Chy11g01482 . . Blo07g00184 Bda11g00536 . . Bpe13g00652 . Bma06g01514 Sed04g1816 . . Cma08g01212 Cma17g00313 Car08g01084 Car17g00286 . Cpe17g00008 Bhi12g02089 Tan06g2639 Cmetu11g0405 Lac12g2386 Hepe03g0119 . Lcy13g0194 . . . . . . . Lsi09g01409 . . Cme11g01989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008189 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 35