Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0197 ATGGCGAAACCCTCGAAGCGACAGGCGTCTTCCGATGAAGCCATGTCCAATGGCTCGAGCTCGTCGGAGGAAGAGGAGCAAACCAACGAGCAGATCAATGAGGAGGAAGACGAGGAGGAGCTTGAAGCGGTTGCTCGCTCGGCAGGCTCCGACGAGGATGAAGCTGCCGATGATTCAGATAACGATACATCACCTGCCGAGAATGGCGAGGAAGAGGATGGAAGTAACGACGGCAATGATGACAAAGCCGATATTAGCAGGCGTGAAAAGGCCAGACTAAGAGATATGCAAAAATTGAAGAAGCAGAAGATTCAGGATATGTTAGATGCGCAGAATGCTGCAATTGACGCTGATATGAATAATAAGGGGAAGGGACGCTTGAAATATCTTCTGCAACAAACAGAGATATTTGCTCATTTTGCAAAAGGCGAGCATTCTTCTTCCCAAAAGAAAACGAAGGGAAGGGGTCGACATGCATCAAAACTAACTGAAGAAGAAGAAGATGAAGAATACCTTAAAGAGGAAGAAGATGGTCTATCTGGGACGGGGAACACTCGTCTAGTTTCACAACCATCTTGTATCCAAGGGAAAATGAGGGATTATCAACTAGCTGGATTAAATTGGCTCATTCGACTATATGAGAATGGCATAAATGGAATCCTTGCTGATGAGATGGGGCTTGGAAAAACTTTACAAACCATCTCCTTATTGGGCTATCTCCACGAGTACAGAGGGATAACAGGGCCCCATATGGTAGTTGCACCAAAATCTACTCTGGGAAACTGGATGAACGAAATTCGTCGTTTTTGCCCTGTCCTACGTGCAGTAAAGTTTCTTGGAAATCCTGATGAAAGGAGGGAGATACGGGATAATTTACTGGTTGCTGGGAAGTTTGATGTTTGTGTTACCAGTTTTGAAATGGCCATCAAGGAGAAGTCTTGTTTGCGTCGTTTTAGTTGGCGCTACATTATTATTGATGAAGCTCATCGAATTAAGAATGAGAATTCCCTCCTTTCAAAGACAATGAGGCTTTATAATACCAACTATCGTCTTCTAATCACTGGCACACCGCTTCAGAACAATCTTCATGAACTATGGTCTCTCCTCAATTTCCTTTTGCCTGAAATATTTAGTTCAGCAGAGACTTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAGCAGGAGGTTGTTCAACAACTTCACAAGGTCCTTCGGCCGTTTCTTCTTCGGAGGTTGAAATCGGATGTCGAGAAAGGCTTACCTCCAAAAAAAGAAACAATACTCAAAGTAGGCATGTCACAGATGCAGAAACAATACTATCGTGCTTTGCTGCAGAAGGATCTTGAAGTTGTTAATGCTGGTGGTGAGCGTAAACGGCTTCTTAATATAGCAATGCAGCTCCGAAAATGCTGTAATCACCCATATTTGTTTCAAGGTGCTGAACCTGGGCCTCCTTACACCACAGGAGACCATCTTATTACAAATGCTGGTAAAATGGTTCTTTTGGACAAGTTGCTTCCAAAGCTAAAAGAGCGTGATTCTAGAGTCCTAATATTTTCACAGATGACAAGGCTGTTGGACATTCTTGAAGATTATTTAATGTTTCGTGGATACTATTACTGCCGGATTGATGGTAACACTGGTGGTGAAGATCGTGATGCATCCATTGATGCCTTCAACAGACCAGGAAGTGAAAAGTTTGTTTTCTTGCTATCAACCAGAGCTGGAGGTCTTGGTATTAATCTTGCTACGGCAGATGTAGTTATTCTTTATGACAGTGACTGA 1791 43.05 MAKPSKRQASSDEAMSNGSSSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAADDSDNDTSPAENGEEEDGSNDGNDDKADISRREKARLRDMQKLKKQKIQDMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGEHSSSQKKTKGRGRHASKLTEEEEDEEYLKEEEDGLSGTGNTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERREIRDNLLVAGKFDVCVTSFEMAIKEKSCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNRPGSEKFVFLLSTRAGGLGINLATADVVILYDSD 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2051521 2059373 - Maker00023816 Lcy13g0197 650502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0197 596 MobiDBLite consensus disorder prediction 79 95 - -
Lcy13g0197 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 375 IPR014001 -
Lcy13g0197 596 Coils Coil 22 42 - -
Lcy13g0197 596 MobiDBLite consensus disorder prediction 1 95 - -
Lcy13g0197 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 413 IPR027417 -
Lcy13g0197 596 Pfam Helicase conserved C-terminal domain 500 595 IPR001650 -
Lcy13g0197 596 CDD DEXHc_SMARCA1_SMARCA5 195 415 IPR044754 GO:0005524(InterPro)
Lcy13g0197 596 MobiDBLite consensus disorder prediction 53 78 - -
Lcy13g0197 596 Gene3D - 423 596 IPR027417 -
Lcy13g0197 596 FunFam Chromatin-remodeling complex ATPase 199 414 - -
Lcy13g0197 596 Pfam SNF2-related domain 201 478 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Lcy13g0197 596 PANTHER SNF2/RAD54 HELICASE FAMILY 14 596 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0008094(PANTHER)
Lcy13g0197 596 MobiDBLite consensus disorder prediction 27 42 - -
Lcy13g0197 596 MobiDBLite consensus disorder prediction 141 184 - -
Lcy13g0197 596 SMART helicmild6 529 595 IPR001650 -
Lcy13g0197 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 596 IPR027417 -
Lcy13g0197 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 596 IPR001650 -
Lcy13g0197 596 CDD SF2_C_SNF 499 596 IPR049730 -
Lcy13g0197 596 Gene3D - 191 422 IPR038718 -
Lcy13g0197 596 MobiDBLite consensus disorder prediction 9 26 - -
Lcy13g0197 596 SMART ultradead3 194 386 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0197 K11654 - - csv:101221495 1067.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0197 Lcy-Chr13:2051521 Lcy13g0261 Lcy-Chr13:2741865 2.80E-129 dispersed
Lcy13g0197 Lcy-Chr13:2051521 Lcy4g0938 Lcy-Chr4:15222284 1.31E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19339 None None None None Lcy TR