Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0203 ATGTCGCTGAAGAGCATCTTTCAAGATATGAGGTCCCGGTCCCGCCGCGTGGTGCAGGACGGCTCGGCGCCGGAGCCGAGGGACGGCCTCGACCAGAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTCAGGGAGGTTCTGATGAGAATCGAGGCGTCCGAGACCTCCTGGCCGCCGAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGCCGGAGCTGGCGAGCCATTACTAAGGAGATCGTCAAAACGCCGGAGGTTTCCGGCAGGTTGACGTTCCCGATCTCTATCAAGCAGGATTTGATTGATGAGTTAACACCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTCTTACTAATGCACTGAGTGACGATGGTAAATTTCTACTTGCTGCTCGTAAATGCAAGCGCCCGACCTACACAGATTATATTATCTCTTTACATGCTGAGGATTTGTCGAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTTGATGGGCAACCACCACATTCCGGAGCCAAGATCACAAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCGCCCAAGGTCCCTGCAGGGAACTATCCAGTTGCCCACATTTCATATGAACTAAATGTGTTGGGATCAAGATGTCTAGCAAATGCTAAAAAGTTGATGTCATTAACAAGCAGGGGTCCAAGGAGAATGCAGTGTATCATGGACGCTATTCCCGCTTCCGCAGTTGAACCTGGAGGAGTGGCTCCCACACAGACTGAGCTTTCTTTGAGCAACGTGGAATTGTTTCCATCGTTCCCATTCCTAAGGTCAAAATCAAATGCGGATAGCTTGCTTTCTGAACCTTTGGGCAGTCAGAAAGATGGAATGCTGGTGCTGAGAAACAAGACTCCCCGGTGGCATGAGCAGCTTCAGTGCTGGTGTTTGAACTTTCATGGAAGAGTTACTATTGCTTCCGTGAAAAATTTTCAACTAGTGGCTTCTTCGGAAAATGAACCACCTACACAAGAACATGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCGTTACCCAATCTCCGCTTTCCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1224 48.2 MSLKSIFQDMRSRSRRVVQDGSAPEPRDGLDQSCWANMPQELLREVLMRIEASETSWPPRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQDLIDELTPGPRDPLLQCFIKRNRSNQTYYLFLSLTNALSDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRCLANAKKLMSLTSRGPRRMQCIMDAIPASAVEPGGVAPTQTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASSENEPPTQEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2099147 2102088 - Maker00023547 Lcy13g0203 650508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0203 407 CDD F-box_AtTLP-like 35 79 - -
Lcy13g0203 407 Gene3D Tubby Protein; Chain A 98 407 IPR025659 -
Lcy13g0203 407 SUPERFAMILY F-box domain 26 78 IPR036047 GO:0005515(InterPro)
Lcy13g0203 407 ProSitePatterns Tub family signature 2. 392 407 IPR018066 -
Lcy13g0203 407 Pfam Tub family 105 402 IPR000007 -
Lcy13g0203 407 FunFam Tubby-like F-box protein 92 407 - -
Lcy13g0203 407 MobiDBLite consensus disorder prediction 1 32 - -
Lcy13g0203 407 Pfam F-box domain 35 78 IPR001810 GO:0005515(InterPro)
Lcy13g0203 407 SUPERFAMILY Tubby C-terminal domain-like 104 407 IPR025659 -
Lcy13g0203 407 PRINTS Tubby superfamily signature 222 249 IPR000007 -
Lcy13g0203 407 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Lcy13g0203 407 PRINTS Tubby superfamily signature 319 336 IPR000007 -
Lcy13g0203 407 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Lcy13g0203 407 PRINTS Tubby superfamily signature 337 353 IPR000007 -
Lcy13g0203 407 PRINTS Tubby superfamily signature 385 407 IPR000007 -
Lcy13g0203 407 PRINTS Tubby superfamily signature 364 383 IPR000007 -
Lcy13g0203 407 PANTHER TUBBY-RELATED 30 406 - -
Lcy13g0203 407 ProSitePatterns Tub family signature 1. 337 350 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0203 Lcy-Chr13:2099147 Lcy6g0905 Lcy-Chr6:9221119 7.16E-149 dispersed
Lcy6g0658 Lcy-Chr6:6240940 Lcy13g0203 Lcy-Chr13:2099147 2.64E-125 transposed
Lcy11g1455 Lcy-Chr11:38444903 Lcy13g0203 Lcy-Chr13:2099147 2.18E-227 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19340 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0203 K19600 - csv:101203437 719.924