Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g0204 | ATGGCGGCTGAAATGATAGTCGAATCAGGCTCGTCGATGGTGAATTTTGGGATGGAGTTGGTCGCTGATCATACTTCGGTGGTTTCTTTGAACTTATTCGTAGCTCTTCTTTGTGGTTGCATTGTTATCGGCCATTTGTTAGAGGAAAATCGATGGATCAACGAGTCCATTATAGCGCTTGTCATTGGATTATGTACCGGCATCATAATTTTGCTAACAACTAGAGGGAAAAGCTCGCATTTATTTTTGTTCAATGAAGAGCTTTTCTTTATTTATCTCCTTCCGCCGATCATTTTCAATGCCGGGTTCCAGGTCAAGAAGAAACAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCATTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATATCGGTTCCCTTGATCTTGGAGATTATCTAGCCATTGGAGCTATTTTTTCTGCAACAGACTCTGTTTGCACCTTACAGGTTCTTAATCAGGATGAGACCCCTCTTCTGTATAGCCTGGTTTTTGGGGAGGGTGTTGTAAATGATGCCACATCGGTTGTGCTATTCAATGCTATCCAGAATTTTGATCTTTCTCACATGAATTCAAGCATTGTTCTGCAATTCATAGGGAACTTTTCCTATCTGTTTATTGCAAGCACTGCGCTGGGAATTTTAGTTGGTCTCCTTAGTGCATACATAATTAAGAAGCTTTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTTATGATACTCATGGCGTATTTCTCTTATATGCTAGCTGAACTCTTCTATTTAAGTGCAATTCTCACTGTATTCTTTTGCGGTATTGTTATGTCTCACTATACATGGCATAACGTGACTGAAAGTTCAAGAGTCACTACAAAGCATGCTTTTGCCACACTTTCATTTGTTGCTGAGATCTTTATCTTTCTTTACGTTGGCATGGATGCTCTTGACATTGAGAAGTGGAGATTTGTTAGCCACAGTCCTGGGAAATCCATTGGGGTGAGCTCAATACTGTTGGGATTGGTTCTCGTTGGAAGAGCAGCCTTCGTTTTTCCATTATCCTCCTTATCCAATCTGACCAAGAAGTCCTCGCACGAAAAACTCAACTTGGAACAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTATCAATGGCACTTGCATATAATCAGTTCACCAGGTCAGGCCACACCCATTTACCAGGCAATGCAATCATGATCACCAGTACCATCACAGTTGTTCTTTCCAGTACAGTGGTATTTGGAATGATGACGAAACCCCTCATAGGAATTCTGCTACCCCAACCAAAATACTCGATGAGCATGCTCTCTTCCGAGCCCTCTTCCCCAAAATCCTTCACAGTCCCACTCCTCACCAATGACCCAAACAGCCCATCCCCTCTGGGCCTATTCCTCCGAATCCCAGCCCACACGGTTCACCATTACTGGCGAAGATTCGACGACGCCTTCATGCGCCCTGTCTTTGGAGGGCGGGGCTTCGTGCCCTTCGTCCCGGGCTCCCCTACCGAAGAGCCCACACAACAATGGCAAACTGAGGGAGCACTGGAAGCCATTGATGACAGTAAAACCATTCTTATACAGACTCGAAGGTGA | 1665 | 44.08 | MAAEMIVESGSSMVNFGMELVADHTSVVSLNLFVALLCGCIVIGHLLEENRWINESIIALVIGLCTGIIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDLSHMNSSIVLQFIGNFSYLFIASTALGILVGLLSAYIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTKPLIGILLPQPKYSMSMLSSEPSSPKSFTVPLLTNDPNSPSPLGLFLRIPAHTVHHYWRRFDDAFMRPVFGGRGFVPFVPGSPTEEPTQQWQTEGALEAIDDSKTILIQTRR | 554 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 2118084 | 2126811 | + | Maker00023968 | Lcy13g0204 | 650509 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g0204 | 554 | PRINTS | Na+/H+ exchanger signature | 102 | 116 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy13g0204 | 554 | PRINTS | Na+/H+ exchanger signature | 88 | 99 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy13g0204 | 554 | PRINTS | Na+/H+ exchanger signature | 117 | 125 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy13g0204 | 554 | PRINTS | Na+/H+ exchanger signature | 157 | 167 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy13g0204 | 554 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 26 | 545 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
Lcy13g0204 | 554 | Pfam | Sodium/hydrogen exchanger family | 34 | 445 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
Lcy13g0204 | 554 | Gene3D | - | 150 | 201 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g0204 | Lcy-Chr13:2118084 | Lcy3g1671 | Lcy-Chr3:43987360 | 1.45E-181 | dispersed | |
Lcy2g1844 | Lcy-Chr2:31920179 | Lcy13g0204 | Lcy-Chr13:2118084 | 4.90E-270 | transposed | |
Lcy9g1151 | Lcy-Chr9:35522556 | Lcy13g0204 | Lcy-Chr13:2118084 | 6.73E-142 | transposed | |
Lcy13g0204 | Lcy-Chr13:2118084 | Lcy3g1670 | Lcy-Chr3:43977179 | 2.32E-190 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g0204 | - | - | - | 0.0 |