Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0204 ATGGCGGCTGAAATGATAGTCGAATCAGGCTCGTCGATGGTGAATTTTGGGATGGAGTTGGTCGCTGATCATACTTCGGTGGTTTCTTTGAACTTATTCGTAGCTCTTCTTTGTGGTTGCATTGTTATCGGCCATTTGTTAGAGGAAAATCGATGGATCAACGAGTCCATTATAGCGCTTGTCATTGGATTATGTACCGGCATCATAATTTTGCTAACAACTAGAGGGAAAAGCTCGCATTTATTTTTGTTCAATGAAGAGCTTTTCTTTATTTATCTCCTTCCGCCGATCATTTTCAATGCCGGGTTCCAGGTCAAGAAGAAACAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCATTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATATCGGTTCCCTTGATCTTGGAGATTATCTAGCCATTGGAGCTATTTTTTCTGCAACAGACTCTGTTTGCACCTTACAGGTTCTTAATCAGGATGAGACCCCTCTTCTGTATAGCCTGGTTTTTGGGGAGGGTGTTGTAAATGATGCCACATCGGTTGTGCTATTCAATGCTATCCAGAATTTTGATCTTTCTCACATGAATTCAAGCATTGTTCTGCAATTCATAGGGAACTTTTCCTATCTGTTTATTGCAAGCACTGCGCTGGGAATTTTAGTTGGTCTCCTTAGTGCATACATAATTAAGAAGCTTTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTTATGATACTCATGGCGTATTTCTCTTATATGCTAGCTGAACTCTTCTATTTAAGTGCAATTCTCACTGTATTCTTTTGCGGTATTGTTATGTCTCACTATACATGGCATAACGTGACTGAAAGTTCAAGAGTCACTACAAAGCATGCTTTTGCCACACTTTCATTTGTTGCTGAGATCTTTATCTTTCTTTACGTTGGCATGGATGCTCTTGACATTGAGAAGTGGAGATTTGTTAGCCACAGTCCTGGGAAATCCATTGGGGTGAGCTCAATACTGTTGGGATTGGTTCTCGTTGGAAGAGCAGCCTTCGTTTTTCCATTATCCTCCTTATCCAATCTGACCAAGAAGTCCTCGCACGAAAAACTCAACTTGGAACAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTATCAATGGCACTTGCATATAATCAGTTCACCAGGTCAGGCCACACCCATTTACCAGGCAATGCAATCATGATCACCAGTACCATCACAGTTGTTCTTTCCAGTACAGTGGTATTTGGAATGATGACGAAACCCCTCATAGGAATTCTGCTACCCCAACCAAAATACTCGATGAGCATGCTCTCTTCCGAGCCCTCTTCCCCAAAATCCTTCACAGTCCCACTCCTCACCAATGACCCAAACAGCCCATCCCCTCTGGGCCTATTCCTCCGAATCCCAGCCCACACGGTTCACCATTACTGGCGAAGATTCGACGACGCCTTCATGCGCCCTGTCTTTGGAGGGCGGGGCTTCGTGCCCTTCGTCCCGGGCTCCCCTACCGAAGAGCCCACACAACAATGGCAAACTGAGGGAGCACTGGAAGCCATTGATGACAGTAAAACCATTCTTATACAGACTCGAAGGTGA 1665 44.08 MAAEMIVESGSSMVNFGMELVADHTSVVSLNLFVALLCGCIVIGHLLEENRWINESIIALVIGLCTGIIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDLSHMNSSIVLQFIGNFSYLFIASTALGILVGLLSAYIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTKPLIGILLPQPKYSMSMLSSEPSSPKSFTVPLLTNDPNSPSPLGLFLRIPAHTVHHYWRRFDDAFMRPVFGGRGFVPFVPGSPTEEPTQQWQTEGALEAIDDSKTILIQTRR 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2118084 2126811 + Maker00023968 Lcy13g0204 650509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0204 554 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy13g0204 554 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy13g0204 554 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy13g0204 554 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy13g0204 554 PANTHER SODIUM/HYDROGEN EXCHANGER 26 545 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Lcy13g0204 554 Pfam Sodium/hydrogen exchanger family 34 445 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lcy13g0204 554 Gene3D - 150 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0204 Lcy-Chr13:2118084 Lcy3g1671 Lcy-Chr3:43987360 1.45E-181 dispersed
Lcy2g1844 Lcy-Chr2:31920179 Lcy13g0204 Lcy-Chr13:2118084 4.90E-270 transposed
Lcy9g1151 Lcy-Chr9:35522556 Lcy13g0204 Lcy-Chr13:2118084 6.73E-142 transposed
Lcy13g0204 Lcy-Chr13:2118084 Lcy3g1670 Lcy-Chr3:43977179 2.32E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0204 - - - 0.0