Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0212 ATGAGAGCTTCAACTTATGGCTTCCCCCTCTTCTCTGTACTGGTTTTCAGTACTCTCATTGCTCTTCAAGTCGTCAATGGCGCTGCTTTGATCAACAATTTCTATAGGCGAAGCTGCCCCCGAGCTGAGAAAATCGTCCGAGACGTCACATTTCAACTCACTAGATCAAATCGCGGTCTCGGCGCTCAACTCCTGAGAGTTCAATTCCATGACTGCTTCGTTCGGGGATGCGATGCATCGATTCTGTTAGATACGGTCGGCGGAAACCAATCGGAGAAGGAAGCAAGGCCGAACCTGTCGCTGTTAGGGTTCGATGCCATCGACAAAATCAAGTCGGAGGTAGAGAAAGCTTGCCCCGGAGTTGTTTCTTGTGCTGACATTCTTGCCCTAGCTGCCCGTGATGCCGTTTCCTTTCCATTCAAAAACCGGCCACTGTGGCCAGTCTTAACCGGAAGAAGGGATGGAACCGTTTCGCGTTTATCAGAAGTTACCGGAAACATCCCGTCGCCGTTCTCCGATTTCGCCACTCTTAAGCAAGTCTTCGAGAAGAAGGGGCTTACAGTGAGCGATCTGGTGATTTTATCAGGTGGCCATACAATTGGAGTAGCTCATTGTGGCACTTTCTCAAGGAGGCTCTACAACTTCACAGGCAAAGGAGATGCAGATCCTTCATTAAATCCAATCTACGCCAACATCCTTAGAAGACAATGTCCAAATCCAGCTGACCCTTCAATCACTGTAGAAATGGATCCAAGAAGTTCAAGTTCATTTGACACTAACTATTTCAAAATCCTCACACAGCACAAAGGTTTGTTTCAATCCGACGCCGCGCTTCTCACCGACCCCTCGTCGTCTCGGATCGTCGAGCAGCTGCAGAATCCGAGAGCTTTCTTCCCTAGCTTTGCTGATTCCATGTTGAAGATGGCAGCCATTGAAATCCTCACTGGAACTGATGGTGAAATTAGGAAACGATGTCGTTTTGTTAATTGA 990 48.08 MRASTYGFPLFSVLVFSTLIALQVVNGAALINNFYRRSCPRAEKIVRDVTFQLTRSNRGLGAQLLRVQFHDCFVRGCDASILLDTVGGNQSEKEARPNLSLLGFDAIDKIKSEVEKACPGVVSCADILALAARDAVSFPFKNRPLWPVLTGRRDGTVSRLSEVTGNIPSPFSDFATLKQVFEKKGLTVSDLVILSGGHTIGVAHCGTFSRRLYNFTGKGDADPSLNPIYANILRRQCPNPADPSITVEMDPRSSSSFDTNYFKILTQHKGLFQSDAALLTDPSSSRIVEQLQNPRAFFPSFADSMLKMAAIEILTGTDGEIRKRCRFVN 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2200480 2203257 + Maker00023331 Lcy13g0212 650517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0212 329 CDD secretory_peroxidase 33 328 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy13g0212 329 SUPERFAMILY Heme-dependent peroxidases 31 329 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 Gene3D Peroxidase, domain 2 168 308 - -
Lcy13g0212 329 PANTHER PEROXIDASE 25-RELATED 31 325 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lcy13g0212 329 FunFam Peroxidase 33 180 - -
Lcy13g0212 329 FunFam Peroxidase 168 308 - -
Lcy13g0212 329 Pfam Peroxidase 46 292 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 Gene3D - 33 329 - -
Lcy13g0212 329 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 ProSiteProfiles Plant heme peroxidase family profile. 29 329 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy13g0212 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Lcy13g0212 329 ProSitePatterns Peroxidases active site signature. 61 72 IPR019794 GO:0004601(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0212 Lcy-Chr13:2200480 Lcy4g0571 Lcy-Chr4:6973599 4.50E-100 dispersed
Lcy13g0212 Lcy-Chr13:2200480 Lcy4g0570 Lcy-Chr4:6967612 1.13E-104 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0212 K00430 - csv:101215642 533.872