Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0226 ATGGGTTGTATCCATACAAAATGTTGCTGTCGCTACCCAAAATCTTTGGTTGGAGAATCCCAAGACTTTCGGCAAGGGGTTCCTTACTGTCTACAAGATAAGAACACTGTGATAGAGAGATCATTGGAGTTTATTCCTGTTGCTTCCCACAACTATCATTTGGAATACTTGGTTCTGGCTCAGCGTGGTTACTACCCTGAATCTCCTGATAAAGAAAACCAAGACAGTTTCTGCATTAGAACAAATATACAAGGTAACCCAAATGTCCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGGATGCAATGTTCAAATTTTGTGAAGGATAGGCTTATAGAAAAGCTATGTAATGATCCCACATTGTTAGATGATCCTGTACAAGCTTATAATTCAGCATTTATATCCACAAATGATGAGTTGCATACAAGCGAGATAGATGATTCCATGAGTGGAACAACTGCAATTACAGTCCTTGTTGTTGGGGATACTCTCTATGTGGCCAATGTGGGTGATTCAAGAGCTGTAATTGCAGTTAAAGAAGGGAATTGTGTCCTTGCCAAGGACTTGTCAAATGATCAGACACCATTTAGAAAAGATGAGTATGAGAGAGTTAAGCTTTGTGGGGCTAGAGTTCTGAGTGTTGATCAAGTGGAAGGACTTGTGGATCCTGATATTCAGTGCTGGGGCGACGAAGAAAGTCAGGGTGGCGATCCGCCTCGACTGTGGGTTCAAAATGGCTTGTATCCTGGGACTGCATTTACCAGGAGCATAGGTGATAGTACTGCAGAGAAGATTGGTGTAAATGCCATTCCTGAGGTTTTAGTTCTTCAGCTTAACCCCAATCATCTTTTCTTTGTGGTTGCCAGTGATGGAGTTTTCGAGTTCCTTTCAAGTCAAACTGTTGTTGATATGGCATCAAGTTATGCAGATCCTCAAGATGCATGTACTGCCATTGCTGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGAACCGATGATATAACGATCATTATTGTTCATATCAAAGGCTTGTCTAATGCGCTGAGAATTCTTCAAGCACTGGACTCTAGTGTTGCTGTAACATTCCTCCTCCAGCAGAAGAGATTTGCAATGCATCCTGAAAGGAGAAACAAATACTCATCTTCCAGCTTAGCATTGGCCAACCAAGTTGATAGAGAGAGGGTTGGTATCAGACATTGA 1212 41.58 MGCIHTKCCCRYPKSLVGESQDFRQGVPYCLQDKNTVIERSLEFIPVASHNYHLEYLVLAQRGYYPESPDKENQDSFCIRTNIQGNPNVHFFGVFDGHGQFGMQCSNFVKDRLIEKLCNDPTLLDDPVQAYNSAFISTNDELHTSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGNCVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEKIGVNAIPEVLVLQLNPNHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIIVHIKGLSNALRILQALDSSVAVTFLLQQKRFAMHPERRNKYSSSSLALANQVDRERVGIRH 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2315551 2319758 - Maker00023258 Lcy13g0226 650531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0226 403 PANTHER PROTEIN PHOSPHATASE 61 344 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy13g0226 403 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Lcy13g0226 403 Pfam Protein phosphatase 2C 72 323 IPR001932 -
Lcy13g0226 403 SUPERFAMILY PP2C-like 48 347 IPR036457 -
Lcy13g0226 403 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169(InterPro)
Lcy13g0226 403 Gene3D - 49 347 IPR036457 -
Lcy13g0226 403 CDD PP2Cc 71 345 IPR001932 -
Lcy13g0226 403 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Lcy13g0226 403 SMART PP2C_4 56 343 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0226 Lcy-Chr13:2315551 Lcy4g0630 Lcy-Chr4:7493870 2.82E-25 dispersed
Lcy2g0846 Lcy-Chr2:7639306 Lcy13g0226 Lcy-Chr13:2315551 1.26E-129 transposed
Lcy11g1482 Lcy-Chr11:38749165 Lcy13g0226 Lcy-Chr13:2315551 1.00E-195 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0226 - - - 0.0