Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g0243 | ATGTCCACTCCATCCGCGGTGATAGCCTTCCACACCCTCACCGAATCTGGAGGGGAAGGAAAAGACAGAACATATAGGGCTCGGTTTTGGTTTTTGAACATGGAAATGGATCAGGTTGATTTGAGTGTTCGATTATCTGCGCTGTGGAACATCATTGGTCTAAAGAGAAGCCTTAAAGAAGACAGAATTCCTTGCCAAATTGAAGAGGGTCTGTTCTTAGGCTCTATTGGAGCTGCCCATAACAAGGATGAGCTGAAGAAATTGAATATCACTCACATTTTAACTATTGCTTGTTCCTTGCCACCTGCTTATCCAAATGATTTTGCATATAAAGTAGTTGGTGTCTTGGACACTAGAGAGGCGGATATTAAAGGGCACTTCGACGATTGTTTTAATTTTATCGACGAAGGAAAACAATCTGGTGGAGGGGTCTTGGTTCATTGCTTTGCTGGAATATCCCGAAGTGTAACCATTACAGTTGCCTATCTGATGAAAAAGTGTGGTATGAATCTAACTCAAGCATTGGAACACGTCAAGAGTAGGCGACCACAGGCTTCTCCAAACGTCGGTTTCATGGTTCAACTCAAGGACTTCGAAACGGCTCTTCAAGCTAGAAAAGAGGAAGAGATGAAGATGCCAAATGTTTGA | 648 | 42.9 | MSTPSAVIAFHTLTESGGEGKDRTYRARFWFLNMEMDQVDLSVRLSALWNIIGLKRSLKEDRIPCQIEEGLFLGSIGAAHNKDELKKLNITHILTIACSLPPAYPNDFAYKVVGVLDTREADIKGHFDDCFNFIDEGKQSGGGVLVHCFAGISRSVTITVAYLMKKCGMNLTQALEHVKSRRPQASPNVGFMVQLKDFETALQARKEEEMKMPNV | 215 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 2598344 | 2601126 | - | Maker00023907 | Lcy13g0243 | 650548 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g0243 | 215 | SMART | dsp_5 | 63 | 201 | IPR020422 | GO:0006470(InterPro) | |
Lcy13g0243 | 215 | PANTHER | DUAL SPECIFICITY PROTEIN PHOSPHATASE | 62 | 202 | - | GO:0004721(PANTHER)|GO:0008330(PANTHER)|GO:0017017(PANTHER)|GO:0033550(PANTHER)|GO:0043409(PANTHER) | |
Lcy13g0243 | 215 | CDD | DSP | 64 | 197 | - | - | |
Lcy13g0243 | 215 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 64 | 205 | IPR029021 | - | |
Lcy13g0243 | 215 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 125 | 183 | IPR000387 | GO:0016311(InterPro) | |
Lcy13g0243 | 215 | FunFam | Dual specificity phosphatase 12 | 65 | 213 | - | - | |
Lcy13g0243 | 215 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 63 | 204 | IPR020422 | GO:0006470(InterPro) | |
Lcy13g0243 | 215 | Gene3D | Protein tyrosine phosphatase superfamily | 57 | 213 | IPR029021 | - | |
Lcy13g0243 | 215 | Pfam | Dual specificity phosphatase, catalytic domain | 71 | 200 | IPR000340 | GO:0016311(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0749 | Lcy-Chr11:21712457 | Lcy13g0243 | Lcy-Chr13:2598344 | 1.23E-14 | dispersed | |
Lcy13g0243 | Lcy-Chr13:2598344 | Lcy3g0013 | Lcy-Chr3:415355 | 1.93E-131 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g0243 | - | - | - | 0.0 |