Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0243 ATGTCCACTCCATCCGCGGTGATAGCCTTCCACACCCTCACCGAATCTGGAGGGGAAGGAAAAGACAGAACATATAGGGCTCGGTTTTGGTTTTTGAACATGGAAATGGATCAGGTTGATTTGAGTGTTCGATTATCTGCGCTGTGGAACATCATTGGTCTAAAGAGAAGCCTTAAAGAAGACAGAATTCCTTGCCAAATTGAAGAGGGTCTGTTCTTAGGCTCTATTGGAGCTGCCCATAACAAGGATGAGCTGAAGAAATTGAATATCACTCACATTTTAACTATTGCTTGTTCCTTGCCACCTGCTTATCCAAATGATTTTGCATATAAAGTAGTTGGTGTCTTGGACACTAGAGAGGCGGATATTAAAGGGCACTTCGACGATTGTTTTAATTTTATCGACGAAGGAAAACAATCTGGTGGAGGGGTCTTGGTTCATTGCTTTGCTGGAATATCCCGAAGTGTAACCATTACAGTTGCCTATCTGATGAAAAAGTGTGGTATGAATCTAACTCAAGCATTGGAACACGTCAAGAGTAGGCGACCACAGGCTTCTCCAAACGTCGGTTTCATGGTTCAACTCAAGGACTTCGAAACGGCTCTTCAAGCTAGAAAAGAGGAAGAGATGAAGATGCCAAATGTTTGA 648 42.9 MSTPSAVIAFHTLTESGGEGKDRTYRARFWFLNMEMDQVDLSVRLSALWNIIGLKRSLKEDRIPCQIEEGLFLGSIGAAHNKDELKKLNITHILTIACSLPPAYPNDFAYKVVGVLDTREADIKGHFDDCFNFIDEGKQSGGGVLVHCFAGISRSVTITVAYLMKKCGMNLTQALEHVKSRRPQASPNVGFMVQLKDFETALQARKEEEMKMPNV 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2598344 2601126 - Maker00023907 Lcy13g0243 650548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0243 215 SMART dsp_5 63 201 IPR020422 GO:0006470(InterPro)
Lcy13g0243 215 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 62 202 - GO:0004721(PANTHER)|GO:0008330(PANTHER)|GO:0017017(PANTHER)|GO:0033550(PANTHER)|GO:0043409(PANTHER)
Lcy13g0243 215 CDD DSP 64 197 - -
Lcy13g0243 215 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 64 205 IPR029021 -
Lcy13g0243 215 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 125 183 IPR000387 GO:0016311(InterPro)
Lcy13g0243 215 FunFam Dual specificity phosphatase 12 65 213 - -
Lcy13g0243 215 ProSiteProfiles Dual specificity protein phosphatase domain profile. 63 204 IPR020422 GO:0006470(InterPro)
Lcy13g0243 215 Gene3D Protein tyrosine phosphatase superfamily 57 213 IPR029021 -
Lcy13g0243 215 Pfam Dual specificity phosphatase, catalytic domain 71 200 IPR000340 GO:0016311(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0749 Lcy-Chr11:21712457 Lcy13g0243 Lcy-Chr13:2598344 1.23E-14 dispersed
Lcy13g0243 Lcy-Chr13:2598344 Lcy3g0013 Lcy-Chr3:415355 1.93E-131 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0243 - - - 0.0