Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0258 ATGCAAGATTTCTTCGGATCCGTTCGCCGATCCTTGGTGTTTCTAGCTCCCGACTGTGACGACGGTGGGAGGTTCGGCGGCCTGGTCGAGAAGATCGGCTCGAGCATCCGTAAATCTCGAAATGGACTGTTTTCTAAGCATTCAGTGCGGGCTCTTCCTCCGGTTGTGAAGGAAGATGCGCCTCCGATTTGGTGGCGGAAGGGAGAGTTGATCGGATGCGGTGCTTTTGGTCGAGTTTATATGGGGATGAATCTTGATTCTGGAGAGCTTCTTGCAGTTAAGCAAGTCTCGATTGCGGCTAATAGTGCTTCAAGGGAGAAAGCGCAAGCTCACATACGGGAGCTGGAGGAGGAAGTGAAGCTTTTGAAAAATCTTTCTCACCCTAATATTGTGAGATACCTGGGAACTGCCAGAGAGGAAGATTCATTAAATATTCTATTGGAGTTTGTTCCTGGAGGATCAATATCATCTCTGTTAGGGAAATTCGGATCTTTCCCTGAGTCTGTTATAAGAACCTACACGAAGCAGCTATTATTGGGGCTTGAGTACCTTCATAAGAATGGCATTATGCATCGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAAGGATGTATTAAACTCGCTGATTTTGGTGCATCCAAGAAAGTGGTTGAACTGGCAACTATAAATGGAGCCAAATCAATGAAGGGCACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACCGGACATAGCTTCTCTGCTGATATATGGAGTGTGGGGTGTACTGTTATCGAAATGGCAACGGGGAAACCTCCATGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTCCATATAGGGAATACTAAGTCCCATCCGCCCATTCCTGAGCACCTATCTGCTGAGGCAAAAGATTTTCTGTTAAAATGTTTACAAGAGGAACCAAACTCAAGGCCCACTGCATCAGACTTGCTGCAGCATCCATTTGTCTCATGTGAGTATCAAGATCCTCATGCAGCAGTCCGTGCCTCTTCCGTGGAATCTGGGAAACCGATGGTTGATTCTAGATTGAATTCTAATGATCTAACAAATTCTACAATCCAACGTTCAACTGGCTTGAAGGATATTTGTGAAATGGGTAGCTTGAGGTGCTCTTCTGTATTTTCCGGGAATTATGGGTCACGGTCCAACTGGGGCTCCAGCAATTTTGAGGATGACATGTGCCAGATAGATGATAAAGATCTATTTGTTAGTTCATCAATAAAGTACAAATCTATTATATCATCACACGATTTGAATAAGAGTTTCAATCCTATGTGTGAACCAACTGATGACTGGGCATGTAAATTGGATGAGAGCTCAGAGTTGGGAGGCAATTTAATGGAATTGTCTGGCATTCAAACTGGCCAGGAATCTACTAGTAAGGGGAATGACTTCACTTTTCCATGTGGTCAATCCGCAGCTGAGGATGATGAAGAAGTTACAGAGTCGAAGATTAAAGCCTTTCTGGATGAGAAGGCTTTAGAACTGAAGAAGCTGCAAACACCTTTATATGAAGAGTTCCGCAGCACAATCAATGCAGCTAATGCTTTAGGAGCAGTTGGAACTGAGAATAGCAAGAGTGTATCTAATCTTCTGAAATTGCCTCCCAAATGTGGGTCACCAAGTAAGCTGCGTGGTAAAAGACTCTCATCAGTTGATGCTGCTAACTGTTCAAGCCGTCAGAGTCGTATAAAACAAGATAGCATATTGCAAGATCGAGCTCTGCAGGAAATTCAGTCGCCTCAGCTTGGGGAATGGAACAAATTGCTTCATACACAGCCAGAGTCTTGCACGCCAAGTTTCTCTGAGAGACAAAGGAAATGGAAAGAAGAGCTTGAAGAAGAACTTAAAAGGAAGCGAGTTTTTGATGGTCAGCAGAGGTGGGAAGAAAAGGATATATATGGTTGA 1941 43.95 MQDFFGSVRRSLVFLAPDCDDGGRFGGLVEKIGSSIRKSRNGLFSKHSVRALPPVVKEDAPPIWWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASREKAQAHIRELEEEVKLLKNLSHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPEHLSAEAKDFLLKCLQEEPNSRPTASDLLQHPFVSCEYQDPHAAVRASSVESGKPMVDSRLNSNDLTNSTIQRSTGLKDICEMGSLRCSSVFSGNYGSRSNWGSSNFEDDMCQIDDKDLFVSSSIKYKSIISSHDLNKSFNPMCEPTDDWACKLDESSELGGNLMELSGIQTGQESTSKGNDFTFPCGQSAAEDDEEVTESKIKAFLDEKALELKKLQTPLYEEFRSTINAANALGAVGTENSKSVSNLLKLPPKCGSPSKLRGKRLSSVDAANCSSRQSRIKQDSILQDRALQEIQSPQLGEWNKLLHTQPESCTPSFSERQRKWKEELEEELKRKRVFDGQQRWEEKDIYG 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2705695 2710982 + Maker00023440 Lcy13g0258 650563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0258 646 Gene3D Transferase(Phosphotransferase) domain 1 65 364 - -
Lcy13g0258 646 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0258 646 FunFam Mitogen-activated protein kinase kinase kinase 2 64 355 - -
Lcy13g0258 646 CDD STKc_MAPKKK 65 327 - -
Lcy13g0258 646 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524(InterPro)
Lcy13g0258 646 FunFam Serine/threonine-protein kinase STE11 62 155 - -
Lcy13g0258 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0258 646 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 54 329 IPR050538 -
Lcy13g0258 646 SUPERFAMILY Protein kinase-like (PK-like) 65 381 IPR011009 -
Lcy13g0258 646 SMART serkin_6 65 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0258 646 Coils Coil 98 125 - -
Lcy13g0258 646 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0258 Lcy-Chr13:2705695 Lcy1g1154 Lcy-Chr1:10810632 1.94E-76 dispersed
Lcy1g0550 Lcy-Chr1:4744483 Lcy13g0258 Lcy-Chr13:2705695 7.09E-08 transposed
Lcy4g0950 Lcy-Chr4:15938708 Lcy13g0258 Lcy-Chr13:2705695 3.21E-06 transposed
Lcy4g1870 Lcy-Chr4:44901404 Lcy13g0258 Lcy-Chr13:2705695 4.25E-251 transposed
Lcy6g2295 Lcy-Chr6:47648500 Lcy13g0258 Lcy-Chr13:2705695 1.48E-22 transposed
Lcy13g0258 Lcy-Chr13:2705695 Lcy4g1937 Lcy-Chr4:45705740 1.81E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65549 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0258 K20606 - csv:101217427 1113.6