Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0260 ATGTGGGAGTGCGACCATTTCAAAGCGACCTTCTCGCGAAAACCCCAGGGCCAGGCAAATCTGTTTCCTCACAGGGGAGAGAGAGCGATGACGATGGCGATACCAGGGAGCATTGTCGCTGTTCTTCTCCTTATGTTGCTTCTCATCATCCTCCTCCTCCTCATTGCCTGCAAACCATGGCGCTTCTTTTCCTATTCCCGTTCTCGCACCATCAAGGTTCCTGACCTTGAGAGACCCCTTGTATCTGATGCTGCGGATGCCACTGAAAACCAAATCAATGAGCTTCCCAGAGATTATGATTTGGAGGGTGCACTCCAAACTGATGGACATTTTCGGTCTCCAAGACTACACGGCCTGATTCATAAACAAAGACTGCCAGCTGCATCACCCCATTTAAGTCAGGGTGATAGATTGGTTCCAGATGTAGTTCCTGATTCTTTAGAAGATATTGCGGTTGGTCAAACACTTAAACGTTCGTACTTCACAAGCCAGATTCCAGAAGTTCAAAAGCATGCAAACCGGAGCCTAGGAAGTGACCAACTCCATGAATTTGCAAGTCAAGCTATCTCACATGGAAGAAGTTACCTCACTTTGGAGGTTACCTCCGGTCCTTCTCGTGGAGTGCGTCATTCCATACATTCTGCAAACACGTCTAGGCTCCCATTAACTCTTGGAAGAGTACCTCCGAGCGATTTACAGCTGAAGGATTCAGAAGTCTCAGGGAAGCATGCCTTGATAAAATGGAATCTAGATAATATGAAATGGGAGCTTGTGGACCTGGGTAGCTTAAATGGGACCTTATTAAATTCTCAACCAATCAACAATCCCGATTCTGGAAGTAGACATTGGGGTCCACCAGTTGAGCTTGCGAGTGGAGATGTTATAACTCTTGGTACAACCTCCAAAGTGTATGTTCATATTACATCTCAGATCGAGAGCCACATTCCCTTTGGAGTTGGTATGGCTTCAGATCCAATGGCTTTACGTCGAGGTGGAAAGAAGCTTGCCATGGAAGATGTTTGCTATTATCAATGGCCTCTTCCTGGGGTTGATCAGTTTGGAATCTTTGGTATCTGCGATGGACATAGTGGAGTAGGGGCCGCCAAATCTGCTAGCGAGATTCTTCCAGAGAAGGTTGCTACGATTCTATCCGATCCACTGAAAAGGGAGAGGGTAGTATCTCTTCGTGATGCTTCAGATGTTCTTAGAGAAGCATTTTCTCAGACTGAAGCTTGCATGAATCACTATTACGAGGGTTGTACTGCCACGGTGCTTTTAGTATGGGCTGATAGTGATGATAATTACTTTGTGCAATGTGCGAATGTCGGGGACTCTGCTTGTGTTCTGAATGTTCATGGAAAGCAGATGAAGATGACAGAAGACCACAGAATAACTAGCTATTCAGAAAGACTCCGAATAGAACAAGCAGGAGAACCATTGAAAGATGGAGAGACACGTTTGTGCGGCTTGAACCTTGCAAGGATGCTTGGTGACAAGTTTCTTAAACAACAAGACCCTCGTTTCAGTTCAGAGCCTTTTATAAGTGAAGTTGTCCGTGTAGATCAAGGAAGCAAAGCTTTTGCAGTGATGGCAAGTGATGGCTTTTGGGATGTGATTGGCCAGAAGAAGGCAATTCAGCTGGTCCTTCAGGCCAGGGAGAGGCACTCCACAGGGGCAGAAAATTTAGCCGAAAAGGTTGCGAATTTTTTGTTGGGCGAGGCTAGAACACTGCGTACAAAAGATAACACTTCCATAATTTTCTTAGATTTTGAGGTTTCTGATAGAATCATTTGTAAAGTTGAACCATGA 1809 45.38 MWECDHFKATFSRKPQGQANLFPHRGERAMTMAIPGSIVAVLLLMLLLIILLLLIACKPWRFFSYSRSRTIKVPDLERPLVSDAADATENQINELPRDYDLEGALQTDGHFRSPRLHGLIHKQRLPAASPHLSQGDRLVPDVVPDSLEDIAVGQTLKRSYFTSQIPEVQKHANRSLGSDQLHEFASQAISHGRSYLTLEVTSGPSRGVRHSIHSANTSRLPLTLGRVPPSDLQLKDSEVSGKHALIKWNLDNMKWELVDLGSLNGTLLNSQPINNPDSGSRHWGPPVELASGDVITLGTTSKVYVHITSQIESHIPFGVGMASDPMALRRGGKKLAMEDVCYYQWPLPGVDQFGIFGICDGHSGVGAAKSASEILPEKVATILSDPLKRERVVSLRDASDVLREAFSQTEACMNHYYEGCTATVLLVWADSDDNYFVQCANVGDSACVLNVHGKQMKMTEDHRITSYSERLRIEQAGEPLKDGETRLCGLNLARMLGDKFLKQQDPRFSSEPFISEVVRVDQGSKAFAVMASDGFWDVIGQKKAIQLVLQARERHSTGAENLAEKVANFLLGEARTLRTKDNTSIIFLDFEVSDRIICKVEP 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2732533 2738847 + Maker00023588 Lcy13g0260 650565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0260 602 PANTHER PROTEIN PHOSPHATASE 2C 331 590 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lcy13g0260 602 SUPERFAMILY SMAD/FHA domain 195 306 IPR008984 GO:0005515(InterPro)
Lcy13g0260 602 FunFam Protein phosphatase 2C 70 191 325 - -
Lcy13g0260 602 CDD PP2Cc 330 590 IPR001932 -
Lcy13g0260 602 FunFam Protein phosphatase 2C 70 326 596 - -
Lcy13g0260 602 Pfam FHA domain 223 298 IPR000253 GO:0005515(InterPro)
Lcy13g0260 602 ProSiteProfiles PPM-type phosphatase domain profile. 318 590 IPR001932 -
Lcy13g0260 602 SUPERFAMILY PP2C-like 331 590 IPR036457 -
Lcy13g0260 602 CDD FHA_PP2C70-like 196 306 - -
Lcy13g0260 602 Pfam Protein phosphatase 2C 329 582 IPR001932 -
Lcy13g0260 602 ProSiteProfiles Forkhead-associated (FHA) domain profile. 222 273 IPR000253 GO:0005515(InterPro)
Lcy13g0260 602 Gene3D - 326 596 IPR036457 -
Lcy13g0260 602 Gene3D - 190 325 - -
Lcy13g0260 602 SMART PP2C_4 312 588 IPR001932 -
Lcy13g0260 602 SMART FHA_2 221 273 IPR000253 GO:0005515(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0260 K01090 - csv:101217195 1009.59