Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0265 ATGTCTCGTGTTCGAAATTTCAATTCTCAAGGAGGGATGTCTAATGATTACTACTGGGCCTCCTTGAATAGATATAATTTCAGAAACCACCATGAGAAGACAAGTAGGAGCAATTATTATGATTATGGCTATTGCAACCATTTTGAATTCTCAGGGCAGCATAAAGAGCAGATTGATAGGTCTATTTATGCGAGGCCTGATACTTTGAACTCCATCAAGCCTCATAACTCTCAGCCTTTTAAGAGGAGGAAGTTTTCTGCTTCACGTTGGGAGGATAGTGGGAGATACCATTGGCAGGCAAGGACATATGATAATGGACCTTCAATCTATAGCAATTTGGTCCATCCTCCTCCAAGATCCAACAATGATGTCTCTACATCTGCCAGCTGTAAACGAGATCGCTCATTAATGGAAGATGATGAGCCTTTTTTTATGTCCAGGGATGAGATTGAGAGATGTTCACCTTCAAGAAAAGATGGTATCGATACACTACGTGAAACACATCTGCGGTACACATATTGTGCCTTCCTTCAGAGTCTTGGTTTGCAGCTTGAGTTACCACAGACTACAATTGGCACTGCAATGATTCTTTGCCATCGGTTTTTTGTTCGAAGGTCACATGCTTGTCATGATAGATTTTTGATTGCCACGTCTGCACTCTTCCTTGCTGCAAAATCCGAGGAGACACCACGGCCTCTGAACAATGTATTGCGAGCTTCATGTGAAATTTTGCACAAACAGGATTTTAATCTCTTATCTTACATGCTCCCTGTTGATTGGTTTGAGCAATATCGTGAAAGAGTAACTGAGGCTGAGCAATTGATACTGACTACTCTCAACTTTGAACTCAACGTACAACATCCCTATGCTCCTCTTATGTCCGTTCTTAACAAGATAGGTCTTTCACAGTCGATCATGGTGAATCTTGCACTGAACTTGATCAGTGAAGGGAATCTTTCTGGCTTGTCTAGTCTATTTAGTAAGCATGTCCTTGCAATTGTGAAAAATTTCTTGAATTTTGGCGTTGATTGTGGCATGAAAGAGGATGCACTGATGATCTTCTTTCCCTCTAGGGATCAAAATGGTGTGTTACTTGATCTATGCACGATTAGCATGCTCGCCTGTTTGATATACTTAGCTGGCGGATTGATATGCTGTTCATGGAAACTTTTGTTTTACAAATTCAAGTATACACATGACTTAAATAACTTGTCAAGTCACTGGGTTCTTGATGTTCCATTAGCATGCATACAAAGTGGGTGGAACTCAAATGTGGTTATGACTGGTTCAGGATGGGCGGATTCTGAACAGAAATATGGTCATTCATCTTTTATGTATGGGGTGAGAATGTATGTACAGCGATTGGAGCTAAGGAGCTCACTCTGGCTTCAATTTAAGCCCCATCAGATAGCTGCTGGAGCTGCATATCTGTCTGCCAAGCTATTGAATGTGGATTTTGCTCCTTATCAAAATATCTTGCAAGAGTTTCAAGCAACGCCAGCTATTCTCCAAGATGTGGCCCAGCAGTTGATGGAGCTGTTCTAA 1545 41.29 MSRVRNFNSQGGMSNDYYWASLNRYNFRNHHEKTSRSNYYDYGYCNHFEFSGQHKEQIDRSIYARPDTLNSIKPHNSQPFKRRKFSASRWEDSGRYHWQARTYDNGPSIYSNLVHPPPRSNNDVSTSASCKRDRSLMEDDEPFFMSRDEIERCSPSRKDGIDTLRETHLRYTYCAFLQSLGLQLELPQTTIGTAMILCHRFFVRRSHACHDRFLIATSALFLAAKSEETPRPLNNVLRASCEILHKQDFNLLSYMLPVDWFEQYRERVTEAEQLILTTLNFELNVQHPYAPLMSVLNKIGLSQSIMVNLALNLISEGNLSGLSSLFSKHVLAIVKNFLNFGVDCGMKEDALMIFFPSRDQNGVLLDLCTISMLACLIYLAGGLICCSWKLLFYKFKYTHDLNNLSSHWVLDVPLACIQSGWNSNVVMTGSGWADSEQKYGHSSFMYGVRMYVQRLELRSSLWLQFKPHQIAAGAAYLSAKLLNVDFAPYQNILQEFQATPAILQDVAQQLMELF 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2785210 2793559 + Maker00023960 Lcy13g0265 650570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0265 514 Gene3D - 127 309 - -
Lcy13g0265 514 SUPERFAMILY Cyclin-like 457 514 IPR036915 -
Lcy13g0265 514 Gene3D - 443 514 - -
Lcy13g0265 514 SMART cyclin_7 175 277 IPR013763 -
Lcy13g0265 514 Pfam Cyclin, N-terminal domain 158 284 IPR006671 -
Lcy13g0265 514 FunFam Cyclin-T1-2 126 309 - -
Lcy13g0265 514 SUPERFAMILY Cyclin-like 143 285 IPR036915 -
Lcy13g0265 514 PANTHER CYCLIN 140 514 IPR043198 GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0008024(PANTHER)|GO:0016538(PANTHER)|GO:0016538(InterPro)|GO:0032786(PANTHER)|GO:0061575(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0265 K15188 - - csv:101216477 607.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0265 Lcy-Chr13:2785210 Lcy8g1641 Lcy-Chr8:42997803 2.75E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g468 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed04g1886 . . . Cma17g00250 . . . Cpe17g00140 Bhi12g01731 Tan06g2538 Cmetu05g0588 . Hepe03g0182 . Lcy13g0265 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006517 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38