Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy13g0266 | ATGCTGTCGAATCAACTGCAAAATGGGATGGACAGAGCAAAGAACATGTGGTCTCGCCTTCCGAACACCGAGGAAGATGAGGACGACCATGTTAGTTTCTTGAAGAAGAATGATGGGGGTGGCGTTGAGAGCCTTGATTATGAGGTCATCGAGAATTATGCTTACTGGGATGAGCAGGCGCAAAGAGGGAAATTATTTATTGGCTATAGTGTGGCAGTTAAGTGGCTGTATGCCTTGCTCATTGGCATTGGCACAGGATTGGCTGCAGTTTTCATAAATATGGCCGTTGAGAACTTTGCTGGCTGGAAATTTTCGTTGACATTTTCCCTAATTCAAAAGTCATATGTAGCTGGTTTTATAGTATATTTAGCAATCAACTTGGTTCTAGTATTATCATCTGTATATATAGTCACACACTTTGCTCCTGCAGCAGCTGGATCTGGCATACCTGAAATCAAGGGTTATTTGAATGGAATTGACATTCATGGTGTCCTTTTCTTCAGAACCCTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTGGCTTTAGGCAAAGAGGGGCCTCTTGTACATACTGGCGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGATCTGCTAAATATCATCTCAATTCCAGGTGGTTACAAGTGTTCAAGAGTGACCGGGATCGTCGTGATCTTGTGACCTGTGGGTGTGCAGCAGGAGTTGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTATTTGCACTGGAAGAAGTAACATCTTGGTGGAAGAGTCAACTTTTGTGGCGTGTATTTTTTACTTCAGCTGTGGTGGCTGTTGTGGTTCGTGCAGCTATGGGATGGTGTAAGAGTGGGAAGTGTGGACATTTTGGTTCTGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTATGCCTTTGGGGAGTTGTTGCCCATGACTGTGATTGGGGTTATTGGAGGCTTATTAGGAGCACTATTCAACCAGCTTACTCTTTACATGACTTATTGGCGACGAAACCATTTGCACAAGAAGGGGAACCGAGTCAAGATCATTGAGGCTTGTCTCATCTCAGTGTTAACGTCAATTATTTCCTTTGGACTACCACTCCTAAGGCAATGTACTCCATGCCCCAAACCTGATCCTGATTTGGGTAATGAATGCCCAAGGCCTCCAGGGATGTATGGGAATTATGTTAATTTTTACTGCAGTAAGGACAATGAATACAATGACCTTGCAACCATCTTCTTCAACACCCAGGACGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATGAATGAATTCAGTGCGCGGAGTTTATTGACCTTTCTGGTTATGTTTTATACCTTAGCTGTTGTGACATTCGGTACTGCAGTTCCTGCTGGTCAATTTGTTCCTGGTATAATGATTGGGTCTACATATGGACGTTTGGTTGGAAAGTTTGTGGTCAGTTTCTACAAGAAACCCAACATTGAAGAGGGAACATATGCTTTGTTGGGTGCTGCATCTTTTCTAGGAGGTTCTATGCGAATGACAGTGTCTCTGTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAATTTTTACCTCTCATCATGCTTGTCCTTCTGATTTCCAAGGCTGTTGGCGATGCCTTTAATGAAGGCCTATATGAAGAGCAGGCTCAGTTGAGGGGTATCCCATTACTGGAATCAAGACCAAAGTACCAGATGCGGAAAATTACAGCGAAGGAGGCCTGTGGAAAAAGGGTTGTGTCCTTCCCCCGTGTTGTTAAGGTTGCAGATGTTGTTAGTATTTTGCGGAGCAACAAACATAATGGCTTTCCTGTGCTTGATTACTCTAGAAATGGAGAAACACGTGTCATTGGACTGATGCTTAGAAGTTACTTGTTAGGACTTCTGCAATCCAAAGTAGATTTCCAGCACAGTCCTTCGCCTTCTGATCCAAGAGGATCCATACCAAGCAGGCACAATTTCAGTGAATTTGTGAAACCTGCTTCCAGTAAAGGAATTTGTATTAATGATATAAATCTTAGTTCAGAGGACCTGGAAATGTACATCGATCTACTCCCATATCTGAATCCATCTCCATATATTGTCCCAGAAGATATGTCTTTGACAAAGGTATATAATCTTTTCCGGCAACTAGGTCTGAGACACGCATTTGTTGTTCCCCGTCCATCGAATGTGGTTGGTTTGATCACTCGAAAGGATTTGTTGATAGAGGATAGCGAAGATTCGGATGCAATGGAACTACAATCGACTAGTGTAAGGTCTCTGACTCTCTATGATGCTTTACTTGTCTACCAAAATAGATATTTTTCAACAGGAATGTTTTGCTCATTGAGAAGTCTTTGA | 2385 | 42.52 | MLSNQLQNGMDRAKNMWSRLPNTEEDEDDHVSFLKKNDGGGVESLDYEVIENYAYWDEQAQRGKLFIGYSVAVKWLYALLIGIGTGLAAVFINMAVENFAGWKFSLTFSLIQKSYVAGFIVYLAINLVLVLSSVYIVTHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSAKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWKSQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYAFGELLPMTVIGVIGGLLGALFNQLTLYMTYWRRNHLHKKGNRVKIIEACLISVLTSIISFGLPLLRQCTPCPKPDPDLGNECPRPPGMYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTMNEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGLYEEQAQLRGIPLLESRPKYQMRKITAKEACGKRVVSFPRVVKVADVVSILRSNKHNGFPVLDYSRNGETRVIGLMLRSYLLGLLQSKVDFQHSPSPSDPRGSIPSRHNFSEFVKPASSKGICINDINLSSEDLEMYIDLLPYLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPSNVVGLITRKDLLIEDSEDSDAMELQSTSVRSLTLYDALLVYQNRYFSTGMFCSLRSL | 794 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 2795702 | 2803963 | + | Maker00023649 | Lcy13g0266 | 650571 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy13g0266 | 794 | PRINTS | Chloride channel signature | 142 | 159 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy13g0266 | 794 | PRINTS | Chloride channel signature | 559 | 573 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy13g0266 | 794 | PRINTS | Chloride channel signature | 468 | 488 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy13g0266 | 794 | PRINTS | Chloride channel signature | 237 | 256 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy13g0266 | 794 | PRINTS | Chloride channel signature | 503 | 519 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy13g0266 | 794 | PRINTS | Chloride channel signature | 173 | 192 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy13g0266 | 794 | PRINTS | Chloride channel signature | 521 | 540 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lcy13g0266 | 794 | SUPERFAMILY | CBS-domain pair | 577 | 749 | IPR046342 | - | |
| Lcy13g0266 | 794 | SUPERFAMILY | Clc chloride channel | 52 | 574 | IPR014743 | - | |
| Lcy13g0266 | 794 | ProSiteProfiles | CBS domain profile. | 702 | 758 | IPR000644 | - | |
| Lcy13g0266 | 794 | SMART | cbs_1 | 592 | 644 | IPR000644 | - | |
| Lcy13g0266 | 794 | SMART | cbs_1 | 705 | 753 | IPR000644 | - | |
| Lcy13g0266 | 794 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 593 | 749 | - | - | |
| Lcy13g0266 | 794 | PRINTS | Plant CLC chloride channel signature | 48 | 56 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lcy13g0266 | 794 | PRINTS | Plant CLC chloride channel signature | 290 | 297 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lcy13g0266 | 794 | PRINTS | Plant CLC chloride channel signature | 258 | 266 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lcy13g0266 | 794 | PRINTS | Plant CLC chloride channel signature | 420 | 436 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lcy13g0266 | 794 | PRINTS | Plant CLC chloride channel signature | 272 | 282 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lcy13g0266 | 794 | Gene3D | - | 574 | 756 | IPR046342 | - | |
| Lcy13g0266 | 794 | FunFam | Chloride channel protein | 694 | 781 | - | - | |
| Lcy13g0266 | 794 | CDD | ClC_6_like | 43 | 572 | - | - | |
| Lcy13g0266 | 794 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 25 | 758 | IPR051280 | GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Lcy13g0266 | 794 | Pfam | CBS domain | 703 | 750 | IPR000644 | - | |
| Lcy13g0266 | 794 | Gene3D | Clc chloride channel | 69 | 573 | - | - | |
| Lcy13g0266 | 794 | FunFam | Chloride channel ClC3 | 66 | 383 | - | - | |
| Lcy13g0266 | 794 | Pfam | Voltage gated chloride channel | 130 | 552 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g0266 | Lcy-Chr13:2795702 | Lcy4g2077 | Lcy-Chr4:47312170 | 6.85E-193 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy13g0266 | K05016 | - | csv:101215989 | 1442.17 |