Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0276 ATGGCCATTTCAGTTCAAGCAATATTTCTTCTCCTCCTTTGCCCTTTCATCCCTTCCATTGTCTCTCACCCTTTAGACCCTCTTTCACCAACTGAAATACAGGCAGTTGCAGCCATTATCAAAGCTTCCAAGCTCGGTCGTTCGTCGAGTCTCACGTTCCAGTACGTCGCCGTAGATGAGCCGAGCAAACCCGCCGTCGTTGCATGGCTTGCAAACCCTTATAAACTCCGAGCACCGCCTCGTCGGGCCTTCGCCATAGTCAGAGTCGATGGGCAAAGTCATGAACTCGTTGTTGACTTGCACAACAATATGACCATCTCCCATAAAACCTACACGGGCACTGGTTATCCGTTGCTGAATGTCGAGGAGCAAGAGATGGCGACCGAGCTCGCGCTTAAACACCCGGCAGCGGTGGCCTCTGTCGAGAAGAGGGGCCTGAAAATTTCAGAGGTGGTGGCTTCAACTTTCACCGTAGGATGGTTTGGAGAAAAGGAGACGAAGAGGGTGATTAAGATTCTGTATTTTTACAAAGAAGGGTCGCCAAATATTTGGGTGAGGCCCATCGAGGGGATCGAAGCTTTGGTGGATCTTGATAAAATGGAGGTTGTCGAGTACAGAGATCGCCATGTTCTTCCTGTACCAAAAGCTCAGGGCACCGATTACAGAGCCTCGGCGTTTAAGCCGCCGTTCGCGGCGGAGACGAAACCGATCACTGTTTACCAACCGGAGGGTCCCAGCTTCAACATTAATGGCCATGAAATAAGATGTGGTGAGTGGAGTAATCCAAGGTGGGCAAACTGGGAATTCCACCTGGGCTTCGACGTTCGAGCAGGGATTACAATATCATCGGCATCCATCGTCGATGTCGACCAACGGCGGCGACGACGAGTTTTATACAAAGCCCAAATCTCGGAGCTCTATGTCCCTTACCAGGACCCGACGGAGGAATGGTTTTACCGCACATTTTTGGACGCCGGCGAGTTCGCATTGGGCCTTTGCGCCGTCGAGCTCGAACCCTTCACTGACTGCCCCGCAAACGCCGTCTTCTTGGACGCCTTCTATGCCGGCCAAGATGGACTTCCGGTGAAAATTTCGAACGCCATTTGCGTGTTCGAGAAGTACGCCGGCGGCGTTGCTTGGCGTCACACAGAGGCTGAAATTTCTGGAGAAGATATTAGAGAAGTTCGACGAGATGTGAGCTTGGTGGTTAGAATGGTTTCTATGGTGGGGAACTATGATTACATCTTCGATTGGGAGTTCAAGACCAGTGGTTCTATCAAATTCCAGGTAGGTTTAACCGGCATTTTCGAGGGCAAGTCCACAATCTACACCCACACAAAAGAGATCAAAGAGGACATTTACGGTACATTAGTAGCACCAAACACAGTGGCCATAAACCACGACCATTTCCTCACATACTATCTCGACCTCGATGTCGACGGCGACCAAAACTCATTTGTCAAAGCCAAGTTAAAGAAGACGGCGGCCGGCGGTAGCACGCCGAGGAAGAGCTACTGGACCGTCGTAAAGGAGACAGCAAAAACGGAACTCGACGCTAGGCTCCGGCTGACAGAGCCGGCTGAGTATTTGATTGTGAACCAGAATAAAGAGAGTGAGGTTGGGAATCAAGTGGCGTACCGTCTGATTCCTGGGCCGGATGCTCCACCGCTGCTGGCGGCGGATGATTACCCGCAGATCCGAGGGGCGATGTCGGATTATAATATTTGGGTTACTCCTTATAATAGATCTGAGATGTGGGCTGCTGGACTTTATGCTGATGGGAGCCGAGGTGATGATACCTTGAAAGTTTGGACTGATAGGAATAGGGATATCTACAACAAGGACATAGTTTTATGGCACACCATTGGATTTCACCACAACCCTGTTCAAGAGGAATTTCCAATAATGCCCACACTTAGCGGTGGCTTCGAACTCCGACCGGCAAATTTCTTCAACCGGAATCCGATACTGCACATGGCGGCTCCGGAGCATGTCAAGGTTCCGCCGCCGTGCAACGCCACCCTTCCGTGA 2031 51.06 MAISVQAIFLLLLCPFIPSIVSHPLDPLSPTEIQAVAAIIKASKLGRSSSLTFQYVAVDEPSKPAVVAWLANPYKLRAPPRRAFAIVRVDGQSHELVVDLHNNMTISHKTYTGTGYPLLNVEEQEMATELALKHPAAVASVEKRGLKISEVVASTFTVGWFGEKETKRVIKILYFYKEGSPNIWVRPIEGIEALVDLDKMEVVEYRDRHVLPVPKAQGTDYRASAFKPPFAAETKPITVYQPEGPSFNINGHEIRCGEWSNPRWANWEFHLGFDVRAGITISSASIVDVDQRRRRRVLYKAQISELYVPYQDPTEEWFYRTFLDAGEFALGLCAVELEPFTDCPANAVFLDAFYAGQDGLPVKISNAICVFEKYAGGVAWRHTEAEISGEDIREVRRDVSLVVRMVSMVGNYDYIFDWEFKTSGSIKFQVGLTGIFEGKSTIYTHTKEIKEDIYGTLVAPNTVAINHDHFLTYYLDLDVDGDQNSFVKAKLKKTAAGGSTPRKSYWTVVKETAKTELDARLRLTEPAEYLIVNQNKESEVGNQVAYRLIPGPDAPPLLAADDYPQIRGAMSDYNIWVTPYNRSEMWAAGLYADGSRGDDTLKVWTDRNRDIYNKDIVLWHTIGFHHNPVQEEFPIMPTLSGGFELRPANFFNRNPILHMAAPEHVKVPPPCNATLP 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2952592 2961635 + Maker00024062 Lcy13g0276 650581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0276 676 FunFam Amine oxidase 247 668 - -
Lcy13g0276 676 SUPERFAMILY Amine oxidase N-terminal region 22 112 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0276 676 Gene3D - 118 212 - -
Lcy13g0276 676 FunFam Amine oxidase 21 117 - -
Lcy13g0276 676 Pfam Copper amine oxidase, N3 domain 119 213 IPR015802 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0276 676 SUPERFAMILY Amine oxidase catalytic domain 226 661 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0276 676 SUPERFAMILY Amine oxidase N-terminal region 115 222 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0276 676 Gene3D - 21 117 - -
Lcy13g0276 676 PANTHER COPPER AMINE OXIDASE 22 662 IPR000269 GO:0005507(InterPro)|GO:0005507(PANTHER)|GO:0008131(PANTHER)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0009308(PANTHER)|GO:0048038(InterPro)
Lcy13g0276 676 Gene3D Copper amine oxidase, catalytic domain 229 667 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0276 676 Pfam Copper amine oxidase, enzyme domain 238 656 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0276 676 Pfam Copper amine oxidase, N2 domain 23 107 IPR015800 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0276 K00276 - - csv:101222468 841.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0276 Lcy-Chr13:2952592 Lcy13g0278 Lcy-Chr13:2998477 4.58E-261 dispersed
Lcy13g0275 Lcy-Chr13:2937600 Lcy13g0276 Lcy-Chr13:2952592 0 tandem
Lcy13g0276 Lcy-Chr13:2952592 Lcy13g0277 Lcy-Chr13:2975101 3.10E-258 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g480 . Blo12g00326 . . . . Bma04g00788 . . Cmo17g00227 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01716 Tan06g2527 . Lac12g2288 Hepe03g0191 . Lcy13g0276 . . . . . . . Lsi09g01326 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97