Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0278 ATGCCAAATAAAATGGCAAAGCTTAAACCCTCCAAACTCATCCTCTTCTTCCTCCCACTCCTCACTTCCCTTCTATCCTCTGCCGCCGCCGTCCACCGCCACCCTCTCGACCCGCTCTCCCCGGCGGAGTTCGAACTCATCCGATCACACATCACAAACGCCACCCCCAACCCCTCTACCAACCTCACCTTCCAATACGTCGCCCTCGCCGACCCCAACAAGCAATCCCTCCTCTCATGGCTCTCAAATCCCAAAGCCCCGCCGCCGCCCCGCCGCGCCACCGCCATCGTCCGTTTCAACAAAGCCACCCATGAGATCCTCATCGACCTAACCCAAAACTCCATCCTCTCGAACCGGGTCCACTCCGGGCCAGCCTACGCGCCGTTCACATCCGAGGAGCAGGCCGACGCCTCCGCGCTGCCGCTGTCCCACCCGCCGTTCGCGGCGGCGGTGAAAAAACGAGGCCTGAAAATGGAAGAGGTGGTTTGCACGTGTTTCAGCCCGGGGTGGTTCGGGGAAAAGAAGCAAAAGAGAATGGTGAAGGTTCCGTGCTATTATTTGGATGGGAGTGTGAATTTGTACATGAGGCCTGTGGAAGGCGTGACGGTGACCGTCGATCTCGATGAGATGAAGATCATCGCGTTTAGGGATAGATATGTGGCTCCGATGCCCAAGGCTGATGGGACTGAGTACAGAGAATCGATGCTGAAGCCGCCGTTTCTGCCGCCGTTGAATGGAATCAAGGTGGTGCAGCCGGAAGGCCCTAGCTTTAAAGTCAATGGCCACTCCGTCAGTTGGGCGAACTGGAATTTCCACTTGGGGTTCGACGGGCGAGCGGGACCAATCATATCGCTAGCTTCAATCTACGACATGGAAAAGCAAGAACGCCGACAAGTATTGTACAGAGCTTTCCTATCGGAGCTGTTCGTGCCGTACATGGACTTGAACGACGAATGGTACTACCGGACCTTTTTCGACGCCGGCGAGTACGGCTTCGGCGACTACGCCGTGCCGTTGGAACCGCTCAGAGACTGCCCGGAGAACGCCGTGTTCATGGACACGTACATGGCCGCCGGAGATGGACGCCCGATCAAGATGCCCAACACTTTTTGCTTGTTTGAACGCCATGCCGGTGATATCATGTGGCGCCACACCGAGGCCACAATTCCGGATAGACTTATTACAGAGACGAGGGCAGAAGTAAGCTTGATTGTGAGAATGGTGGCAGCTCTGGGCAACTATGACTATATTGTTGATTGGGAATTCAAGCAGAGTGGCTCCATTATTGCTAATGTTGGGTTAACCGGGTTGCTGGCAATTAGGGCATCGAAGTACACTCACAGTGACCAAATTAAGGAGGAAGTCTACGGTACTCTGTTAGCCGAGAATACGATCGGCGTCCGTCATGACCACTTCCTCACCTACCACCTCGATCTCGACGTCGACGGCAGCGCCAACTCCTTCGTCAAATCCAACCTCCGCACAGTCCGATCGCCGGACCCCAATTTTCCCAGGCGGAGCTATTGGACGGTCGACGCCGAGACGGCTAAAACAGAGGCCGATGCAAGGATCAAATTCGGCCTCCACGAGGCCGAGTTGGCGATCGTTAATCCCAATCGGAGGACCAAACTGGGGAATCCCGTCGGCTACCGTCTGATTCCAAAGTCGGCAACCAGTCCTCTTTTGAGTTCGGATGATTACCCCCAAATCAGGGGAGCGTTTACGAATTACAATGTGTGGGTTACACCGTATAATAGCTCTGAGAAATGGGCTTCTGGACTCTTCACTGATCAGAGCTGTGGAGACGATACCTTGGCTACTTGGAGTCTCAGGAACAGAGAGATAGAGAACAAGGACATAGTGATGTGGTACACAATAGGGTTTCATCATGTGCCTTGTCAAGAGGATTTCCCATTGATGCCAACTCTGAGCAGTGGGTTTGAGCTGAAGCCAACCAATTTCTTTGAGAGCAATCCTGTGCTTAAAGTCACCCCACCCCAGGTAATGAATATGAGTCTGAACAGGGGCATTGAGAATAAAGATATTGTTTTATGGTACACGGTGGGGTTCCATCACAGCCCTTGCAAAGAAGAGTTTCCGGCGATGGCCGCCCTCCACGGCGGCTTCGAGCTCCGACCAACTAATTATTTTGACAGAAACCCTTTGCTCAAATCACCTCTTACTACAATTGTATTAGTGGTGTTGCACGGCGGCGGAACCTTGACATGCTCCGGAGCCGCCATGTGCAGTATGGGATTCCGGTTGAAGAAATTTGCCGGTCGGAGTTCGAAGCCACCGCTAAGTGTGGGCATTATTGGAAATTCCTTTTCAACAGGGTTGTGGTGA 2346 53.54 MPNKMAKLKPSKLILFFLPLLTSLLSSAAAVHRHPLDPLSPAEFELIRSHITNATPNPSTNLTFQYVALADPNKQSLLSWLSNPKAPPPPRRATAIVRFNKATHEILIDLTQNSILSNRVHSGPAYAPFTSEEQADASALPLSHPPFAAAVKKRGLKMEEVVCTCFSPGWFGEKKQKRMVKVPCYYLDGSVNLYMRPVEGVTVTVDLDEMKIIAFRDRYVAPMPKADGTEYRESMLKPPFLPPLNGIKVVQPEGPSFKVNGHSVSWANWNFHLGFDGRAGPIISLASIYDMEKQERRQVLYRAFLSELFVPYMDLNDEWYYRTFFDAGEYGFGDYAVPLEPLRDCPENAVFMDTYMAAGDGRPIKMPNTFCLFERHAGDIMWRHTEATIPDRLITETRAEVSLIVRMVAALGNYDYIVDWEFKQSGSIIANVGLTGLLAIRASKYTHSDQIKEEVYGTLLAENTIGVRHDHFLTYHLDLDVDGSANSFVKSNLRTVRSPDPNFPRRSYWTVDAETAKTEADARIKFGLHEAELAIVNPNRRTKLGNPVGYRLIPKSATSPLLSSDDYPQIRGAFTNYNVWVTPYNSSEKWASGLFTDQSCGDDTLATWSLRNREIENKDIVMWYTIGFHHVPCQEDFPLMPTLSSGFELKPTNFFESNPVLKVTPPQVMNMSLNRGIENKDIVLWYTVGFHHSPCKEEFPAMAALHGGFELRPTNYFDRNPLLKSPLTTIVLVVLHGGGTLTCSGAAMCSMGFRLKKFAGRSSKPPLSVGIIGNSFSTGLW 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2998477 3021205 - Maker00023825 Lcy13g0278 650583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0278 781 ProSitePatterns Copper amine oxidase copper-binding site signature. 625 638 IPR049947 -
Lcy13g0278 781 SUPERFAMILY Amine oxidase N-terminal region 33 122 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0278 781 Gene3D Copper amine oxidase, catalytic domain 670 733 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0278 781 FunFam Amine oxidase 257 672 - -
Lcy13g0278 781 SUPERFAMILY Amine oxidase catalytic domain 235 668 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0278 781 SUPERFAMILY Amine oxidase N-terminal region 125 232 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0278 781 Gene3D Copper amine oxidase, catalytic domain 257 669 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0278 781 Pfam Copper amine oxidase, N2 domain 34 119 IPR015800 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0278 781 FunFam Amine oxidase 128 221 - -
Lcy13g0278 781 FunFam Amine oxidase 32 127 - -
Lcy13g0278 781 SUPERFAMILY Amine oxidase catalytic domain 670 729 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0278 781 Pfam Copper amine oxidase, N3 domain 128 220 IPR015802 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0278 781 Gene3D - 129 222 - -
Lcy13g0278 781 Pfam Copper amine oxidase, enzyme domain 247 661 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0278 781 Pfam Copper amine oxidase, enzyme domain 673 722 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0278 781 Gene3D - 32 127 - -
Lcy13g0278 781 PANTHER COPPER AMINE OXIDASE 30 667 IPR000269 GO:0005507(InterPro)|GO:0005507(PANTHER)|GO:0008131(PANTHER)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0009308(PANTHER)|GO:0048038(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0278 K00276 - - csv:101210998 1125.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1763 Lcy-Chr12:38409288 Lcy13g0278 Lcy-Chr13:2998477 9.25E-198 dispersed
Lcy12g1764 Lcy-Chr12:38435864 Lcy13g0278 Lcy-Chr13:2998477 4.87E-206 dispersed
Lcy13g0275 Lcy-Chr13:2937600 Lcy13g0278 Lcy-Chr13:2998477 9.55E-268 dispersed
Lcy13g0276 Lcy-Chr13:2952592 Lcy13g0278 Lcy-Chr13:2998477 4.58E-261 dispersed
Lcy13g0278 Lcy-Chr13:2998477 Lcy13g0280 Lcy-Chr13:3047686 0 dispersed
Lcy13g0277 Lcy-Chr13:2975101 Lcy13g0278 Lcy-Chr13:2998477 0 tandem
Lcy13g0278 Lcy-Chr13:2998477 Lcy13g0279 Lcy-Chr13:3032075 1.73E-95 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g485 . Blo12g00327 . . . . . . . . . . . . . . . . . . . . . . Cla06g00580 Cam06g0618 Cec06g0620 Cco06g0626 Clacu06g0605 Cmu06g0598 Cre06g1366 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01714 . . Lac12g2284 Hepe03g0193 . Lcy13g0278 . . . . . . . Lsi09g01324 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97