Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0279 ATGCTCCGGATAGTTTTACATTGTTGGATCTGGGCAAACTGGGAATTCCACCTGGGCTTCGACGTTCGAGCAGGGATTACAATATCATTGGCATCCATCGCCGACGTCGAGCAACGGCGGCGACGGCGAGTTTTATACAAAGCCCAAATCTTGGAGCTCTTCATCCCTTACCGGGACCCGACGGAGGAATGGTTTTACCAAACATTTTTGGGCGCCGGTGAGTTCGCGTTGGGCCTTTGCATCGTCGAGCTCGAACCCTTCACTGACTGCCCTGCAAACGCCGTCTTCTTGGATGCCTTCTACGTCGGCCAAGACGGACTTCTGGTGAAAATTCCGAACGTCGTCTGCATGTTCGAGAAGCACGCCCGCGGTGTTGCTTGGTGTCACAATCGCACTCTTTCGAACTTGCAAGCGATTGTGCGGCACTTACTCTCGCCCACGAGTAAGTCATCCAATTCGATTTCGGATCGCTGGTGGCACAAAGGGCCTATCTCGCAACCTCCACCCCCGTTCTTGGAAAGCGGGAATGGGTTGACATGGGCATGCGACCATGGGCAACATGTTTTGGACAAGCAAGACCATGACACTTGGCATCACAAAGAGGCTGAAATTTCTGGAGAAGATATTAGAGAAGTTCGACGAAATGTGAGCTTGGTGGTTAGAATGGTTTCTATGGTGGAAACTATGATTACATCTTTGATTGGGAATTCAAGACCAGTGGTTCTATCAAATTCCAGTTACAGAAGACTGGACGTAGTCCCGAGCTTGAGACGAACCAGTATACTTTTCGGTGTCGTAGGTTTAACAGGCATACTAGAAGGCAAGTCCACAATCTACACCCACACAAAAGAGATCAAAGAGGACATTTACGGGACATTGGTAGCACCAAACACAGTGGCCATAAACCACGACCATTTCCTCACATACTATCTCGACCTCCCGTCGACGGCGACCAAAACTCATTTTGTCAAAGCCAAGTTAAAGAAGACGGCGGCCGACGGCAGCACGCCCAAGAAGAGCTACTGGACCGTCGTGAAGGAGACGATGAAAACGGAACTCGACGCCAGGCTCCAGCTGACAGAGCCGGCTGAGTATTTGATCGTGAACCAGAATAAAGAGAGTGAGGCTGGGAATCAAGTGGCGTACCGTGATGGCGTGATTCCCGGGCCGGATGATTACCCGCAGATTCGGGGGGCGTTGTCGGATTATAATATTTGGGTTACTCCTTATAATAGATCTGAGATGTGGGCTAGCGGACTTTATGCTGATGGGAGCCGAGGTGATGATACCTTGAAAGTTTGGACTGACAGGGATTCGAACCACAAATCTGGTGGTCATCAGTACTGTAAGGGACTACCGGACACACACATATCTCCACAATGGTATGATATTGTCCACTTTGGGCATAAGCCCTCATGGCTTTGCTTTTGGATCACCCCAAAAGGCCTCATACCAATGGAGATACTTGACGACTCCTCTTCTCCGGAGTATACCCGCCTACCCAGAGCTCAACCACGGATCTCCCCATGTACTTCAAGGCTCATAACTTCTTTGTTCGGCACCCGAGGATTCCACCCAACATGGCTACTCCCGGGGCATGGCTCTGATACCACTTGTAAGGGACTACCGGACACACACATATCTCCACAATGGTATGATATTGTCTACTTTGGGCATAAGCCCTCATGGCTTTGCTTTTGGATCACCCCAAAAGGCCTCATACCAATGGAGATACTTGTCCTCCCTTATAAACCCATGATCATCCCCTTATCTAGCCGATGTGGGACTTTGGTCGCACTCCCAACAATTGTCAGTGGGAATAGGGATATCTACAACAAGGACATAGTTTTATGGCGCACCATTGGATTTCACCACAACCTTCTTCAAGAGGAATTTCCAATAATGTCCACACTTCGAACTCTGACCAGCAAATTTCTTCAACCGGAATCCGATACTGCACATGGCGGAGCATGTCAAGGGTCCGCCACTGTGCAACGCCACCCTTCCGTGAATGTCAATGCAAAAATCTTTAACCTT 2037 49.58 MLRIVLHCWIWANWEFHLGFDVRAGITISLASIADVEQRRRRRVLYKAQILELFIPYRDPTEEWFYQTFLGAGEFALGLCIVELEPFTDCPANAVFLDAFYVGQDGLLVKIPNVVCMFEKHARGVAWCHNRTLSNLQAIVRHLLSPTSKSSNSISDRWWHKGPISQPPPPFLESGNGLTWACDHGQHVLDKQDHDTWHHKEAEISGEDIREVRRNVSLVVRMVSMVETMITSLIGNSRPVVLSNSSYRRLDVVPSLRRTSILFGVVGLTGILEGKSTIYTHTKEIKEDIYGTLVAPNTVAINHDHFLTYYLDLPSTATKTHFVKAKLKKTAADGSTPKKSYWTVVKETMKTELDARLQLTEPAEYLIVNQNKESEAGNQVAYRDGVIPGPDDYPQIRGALSDYNIWVTPYNRSEMWASGLYADGSRGDDTLKVWTDRDSNHKSGGHQYCKGLPDTHISPQWYDIVHFGHKPSWLCFWITPKGLIPMEILDDSSSPEYTRLPRAQPRISPCTSRLITSLFGTRGFHPTWLLPGHGSDTTCKGLPDTHISPQWYDIVYFGHKPSWLCFWITPKGLIPMEILVLPYKPMIIPLSSRCGTLVALPTIVSGNRDIYNKDIVLWRTIGFHHNLLQEEFPIMSTLRTLTSKFLQPESDTAHGGACQGSATVQRHPSVNVNAKIFNL 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3032075 3041225 + Maker00023498 Lcy13g0279 650584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0279 679 SUPERFAMILY Amine oxidase catalytic domain 597 648 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0279 679 Pfam Copper amine oxidase, enzyme domain 598 638 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0279 679 Pfam Copper amine oxidase, enzyme domain 11 135 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0279 679 Pfam Copper amine oxidase, enzyme domain 266 440 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0279 679 SUPERFAMILY Amine oxidase catalytic domain 265 440 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0279 679 Gene3D Copper amine oxidase, catalytic domain 260 444 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0279 679 Gene3D Copper amine oxidase, catalytic domain 6 229 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0279 679 Gene3D Copper amine oxidase, catalytic domain 582 651 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0279 679 SUPERFAMILY Amine oxidase catalytic domain 10 131 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lcy13g0279 679 PANTHER COPPER AMINE OXIDASE 266 639 IPR000269 GO:0005507(InterPro)|GO:0005507(PANTHER)|GO:0008131(PANTHER)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0009308(PANTHER)|GO:0048038(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0279 K00276 - - csv:101222468 243.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0527 Lcy-Chr11:12395461 Lcy13g0279 Lcy-Chr13:3032075 2.25E-15 dispersed
Lcy13g0279 Lcy-Chr13:3032075 Lcy3g0744 Lcy-Chr3:26819933 2.02E-49 dispersed
Lcy13g0278 Lcy-Chr13:2998477 Lcy13g0279 Lcy-Chr13:3032075 1.73E-95 tandem
Lcy13g0279 Lcy-Chr13:3032075 Lcy13g0280 Lcy-Chr13:3047686 3.48E-93 tandem
Lcy2g1256 Lcy-Chr2:13365123 Lcy13g0279 Lcy-Chr13:3032075 5.51E-17 transposed
Lcy6g2108 Lcy-Chr6:44730822 Lcy13g0279 Lcy-Chr13:3032075 1.43E-47 transposed
Lcy12g2166 Lcy-Chr12:42969156 Lcy13g0279 Lcy-Chr13:3032075 1.08E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g486 . . Bda03g00890 . Bpe04g00834 . Bma04g00786 . Cmo08g01122 Cmo17g00225 . . . . . . . . . . . . . . Cla06g00581 Cam06g0619 Cec06g0621 Cco06g0627 Clacu06g0606 Cmu06g0599 Cre06g1367 . . . Cone4ag0238 . . . . . . . . . . . . Sed01g3969 . . Cma08g01145 Cma17g00239 Car08g01028 Car17g00217 Cpe12g00201 . Bhi12g01713 Tan06g2525 Cmetu01g1582 Lac12g2283 Hepe03g0194 . Lcy13g0279 . . . . . . . Lsi09g01323 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019172 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1