Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g0281 ATGAATGGTGCTACAACAACAAACTCTGAACCAGACAACTCTGAATATGTCGAAGTTGATCCCACAGGAAGATATGGGAGATACAACGAAGTTCTTGGCAAAGGAGCGTCCAAGACAGTTTACAGAGCCTTCGATGAATACGATGGCATTGAAGTGGCGTGGAATCAAGTGAAGCTTTGCGATTTTCTTCAAACTCCTGAAGATCTCGAACGGCTGTACAGAGAAATCCATTTGTTGAAGACTTTAAAACACAACAACATAATGAAATTCTATTCTTCTTGGGTTGACACTGCCAATAGAAACATTAACTTCGTTACAGAGATGTTCACTTCTGGGACTCTTAGACAATACAGGCTGAAGCACAAGCGAGTCAACATCAGAGCTGTGAAGCATTGGTGCAGACAGATTTTAAGAGGTCTTCTCTATCTTCACAGCCATGACCCGCCTGTAATCCACAGAGACCTTAAATGTGACAATATTTTTGTCAATGGGAATCAAGGAGAAGTCAAAATTGGTGACCTTGGCCTTGCTGCTATTCTTCGTAAATCCTATGTTGCTCGATGTGTTGGAACGCCAGAGTTTATGGCTCCAGAGATTTATGAAGAGGAGTATAATGAATTGGTTGATATATATTCTTTTGGAATGTGCATTTTGGAGATGGTTACTTTTGAATATCCTTACAGTGAATGCAACCATCCTGCTCAGATTTACAAGAAAGTTATCTCTGGGAAGAAACCAGATGCTTTGTATAAGGTGAACGATCTCGAGGTTCGGTATTTCGTCGAGAAATGCTTGGCGACTGTATCGACTAGGCTTTCTGCTAGGGAGCTTTTGAATGATCCTTTTCTTCAAATTGATGGTTGTGATTCCTTGCTGAGGCCAATAGACTACTATTCAGAATATGATGAAGTGAACAATTCTCTTTTTAGAGGGCCTCTTTATGGACTTCCTCATGGTCCTTTGGCTAATGGTTATGTGAATTATTTTGGTCATGAGGCTGGGAATGCTTTGGATTACTGTCCGATTGATAACGAAGCGAGCGAAATCGATCTTTTCTCCTGTCAAGAGGATGAGCATTTGGCAGATGTTGATATCACTATTAAAGGGAGAAGAAGAGGCGACGACGATATATTTCTACGACTTCGAATTGCAGATAAAGAAGGTAAGAAGAGTCAAGAGAAATGTTTATGTTTTGTTGTTTTGAGGCTGTGGAGTTTTGATGTTATTATAGCATTCGAACTATCGATAACGTTTTTTTGTCTTGCAGGTCGGATTCGAAACATCTACTTCCCCTTTGATTTAGAGAATGACAGTTCTTTGAGTGTTGCAAATGAGATGGTTTCAGAGCTTGACATTACTGATCAAGATGTGAAGAAGATTGCTGATATGATAGATGGGGAAATTGCTACATTGGTGCCAGAATGGAAGAGGGGAACAAGCTTAGAGGAAACTCCAGATTGCACTGATTCTAATGTTTGTCACAATTGTGCTTTAAATGGTTCTCTTTTGGATTACGTTTCGCCGCATAATCCCGCGACGAAGAACCTGCACATTCTTCGGTGTTCCGAAGAGCATGGATGTGCTTCCATCCATGGCCGTTTTGAAGAGATCACATACCAAGTTGAAGGGTCAGATCAGTTCAATGGAGATGAAAACTTGCATAGAACACCGGAGAATTCGAGCGATATCCATTACGCTGATATTTGGGCGCAACGAGATGGACCAGAGATTGTTTCACATGAATCTGGAGAAGTCAGTTGCGATGAATCGAACGAAACATCGGTGCAGCCAAAACTCGAGAAGGAAGGAAGAACTGTTAATATGGACAATCATCAAAGGGAATTCCAAACAAGAAACTCTAGCTCATCGAATCCTTCGATGTCGTTCGCCGACGATCACGAGAACGAAATTCGACAAGAACTCAGATGGCTCAAGGCTAAATACCAAATGCAGTTGAGGGAGCTAAGGGATCAACAGTTAGGAGTCAAAACCAAATCCTTCAGCTTGCACACCAATCCCAACCTCGTCGAGACCGACATCGGAGCTTCAGTATCTCTGCTCTCACCAAACTTCAATGAAGCAAAAACCAAGGATCTCTTAGCATCTCTATCCTTTGGCAAGAACATCACTTCACATTCACCCCTAGTCGCCAATAACATTTCGGACAACCAAACCTTTCAAGACGACAACATCGTCGACGAGTCGAGTAGTCCCGAGCTGCTGGTCACTGCCAAGAGTTTCTATACAGGAGCATTGTTTCCACATTCTCTCCAAAGAGCAACCTCCCTTCCTGTTGATGCCATAGATTTTTAG 2313 42.07 MNGATTTNSEPDNSEYVEVDPTGRYGRYNEVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLKHNNIMKFYSSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSYVARCVGTPEFMAPEIYEEEYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVISGKKPDALYKVNDLEVRYFVEKCLATVSTRLSARELLNDPFLQIDGCDSLLRPIDYYSEYDEVNNSLFRGPLYGLPHGPLANGYVNYFGHEAGNALDYCPIDNEASEIDLFSCQEDEHLADVDITIKGRRRGDDDIFLRLRIADKEGKKSQEKCLCFVVLRLWSFDVIIAFELSITFFCLAGRIRNIYFPFDLENDSSLSVANEMVSELDITDQDVKKIADMIDGEIATLVPEWKRGTSLEETPDCTDSNVCHNCALNGSLLDYVSPHNPATKNLHILRCSEEHGCASIHGRFEEITYQVEGSDQFNGDENLHRTPENSSDIHYADIWAQRDGPEIVSHESGEVSCDESNETSVQPKLEKEGRTVNMDNHQREFQTRNSSSSNPSMSFADDHENEIRQELRWLKAKYQMQLRELRDQQLGVKTKSFSLHTNPNLVETDIGASVSLLSPNFNEAKTKDLLASLSFGKNITSHSPLVANNISDNQTFQDDNIVDESSSPELLVTAKSFYTGALFPHSLQRATSLPVDAIDF 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3072507 3075472 + Maker00023394 Lcy13g0281 650586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g0281 770 Gene3D - 425 478 - -
Lcy13g0281 770 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Lcy13g0281 770 CDD STKc_WNK 24 283 - -
Lcy13g0281 770 Gene3D Transferase(Phosphotransferase) domain 1 109 288 - -
Lcy13g0281 770 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 659 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lcy13g0281 770 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0281 770 MobiDBLite consensus disorder prediction 612 629 - -
Lcy13g0281 770 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
Lcy13g0281 770 SUPERFAMILY Protein kinase-like (PK-like) 29 284 IPR011009 -
Lcy13g0281 770 FunFam probable serine/threonine-protein kinase WNK9 109 288 - -
Lcy13g0281 770 MobiDBLite consensus disorder prediction 609 629 - -
Lcy13g0281 770 SMART serkin_6 26 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0281 770 MobiDBLite consensus disorder prediction 1 15 - -
Lcy13g0281 770 MobiDBLite consensus disorder prediction 1 20 - -
Lcy13g0281 770 ProSiteProfiles Protein kinase domain profile. 26 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g0281 770 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g0281 770 Coils Coil 638 658 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0281 Lcy-Chr13:3072507 Lcy2g1808 Lcy-Chr2:29933277 2.72E-185 dispersed
Lcy12g1534 Lcy-Chr12:35161832 Lcy13g0281 Lcy-Chr13:3072507 2.20E-141 transposed
Lcy8g1692 Lcy-Chr8:43517851 Lcy13g0281 Lcy-Chr13:3072507 5.07E-151 transposed
Lcy13g0281 Lcy-Chr13:3072507 Lcy4g1952 Lcy-Chr4:45859161 2.33E-254 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65550 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g0281 K08867 - csv:101210511 1295.8